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0001 # Example dnaphysics History
0002
0003 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
0004 which **must** added in reverse chronological order (newest at the top).
0005 It must **not** be used as a substitute for writing good git commit messages!
0006
0007 -------------------------------------------------------------------------------
0008
0009 ## 2025-11-10 Gabriele Cosmo (dnaphysics-V11-03-04)
0010 - Fixed coding conventions for long lines in SteppingAction source.
0011
0012 ## 2025-05-06 Sebastien Incerti (dnaphysics-V11-03-03)
0013 - Added UI command to record first step only; elastic.in updated accordingly
0014
0015 ## 2025-03-21 Sebastien Incerti (dnaphysics-V11-03-02)
0016 - Added elastic.in and plotElastic.C macros to show distribution of scattering angles
0017
0018 ## 2025-01-24 Sebastien Incerti (dnaphysics-V11-03-01)
0019 - Updated SteppingAction.cc with more comments & process identification
0020
0021 ## 2025-01-22 Sebastien Incerti (dnaphysics-V11-03-00)
0022 - Added possibility to simulate radioactive nuclei
0023 -- added radioactive.in and plotRadioactive.C
0024 -- modified PhysicsList.cc and SteppingAction.cc
0025
0026 ## 2024-10-29 Sebastien Incerti, Hoang Tran (dnaphysics-V11-02-04)
0027 - Fixed issue with visualization by setting default World size and material
0028 in DetectorConstruction.cc
0029
0030 ## 2024-10-05 Sebastien Incerti (dnaphysics-V11-02-03)
0031 - Updated README
0032
0033 ## 2024-09-27 Batmunkh Munkhbaatar, Sebastien Incerti (dnaphysics-V11-02-02)
0034 - update of README and dnaphysics.in
0035 - update DetectorConstructor and DetectorMessenger files with given
0036 values of material density and World size
0037 - added messenger for World size change
0038 - added messenger for material density change
0039
0040 ## 2024-05-09 Sebastien Incerti (dnaphysics-V11-02-02)
0041 - Added plotDeexcitation.C and deexcitation.in
0042
0043 ## 2024-03-13 Sebastien Incerti (dnaphysics-V11-02-01)
0044 - Updated headers
0045
0046 ## 2024-02-05 Sebastien Incerti (dnaphysics-V11-02-00)
0047 - PhysicsList: switched to DNA physics constructors i/o model activator
0048 - Added new ntuple to collect track information
0049
0050 ## 2023-11-14 Vladimir Ivanchenko (dnaphysics-V11-01-03)
0051 - PhysicsList - more clear implementation of two cases: usage of a DNA
0052 physics constructor or standard physics constructor + DNA model activator
0053
0054 ## 2023-11-09 H. Tran (dnaphysics-V11-01-02)
0055 - update README files and dnaphysics.in
0056
0057 ## 2023-11-09 H. Tran (dnaphysics-V11-01-01)
0058 - update README & TrackingCut for heavy ions
0059
0060 ## 2023-09-09 S. Incerti (dnaphysics-V11-01-00)
0061 - update README & SteppingAction file with units and addition of gamma processes
0062
0063 ## 2022-11-07 Hoang Tran (dnaphysics-V11-00-03)
0064 - update README file for radioactive decay
0065
0066 ## 2022-11-04 Vladimir Ivanchenko (dnaphysics-V11-00-02)
0067 - dnaphysics.cc, DetectorConstruction, DetectorMessenger - added
0068 UI command to add different standard EM, DNA physics, and
0069 radioactive decay
0070 - PhysicsList - added possibility to change DNA physics via UI
0071 commands
0072
0073 ## 2022-02-28 Vladimir Ivanchenko (dnaphysics-V11-00-01)
0074 - dnaphysics.cc - enable visualisation only in interactive mode,
0075 use G4RunManagerFactory
0076 - PhysicsList - added RadioactiveDecayPhysics
0077
0078 ## 2021-12-10 Ben Morgan (dnaphysics-V11-00-00)
0079 - Change to new Markdown History format
0080
0081 ---
0082
0083 # History entries prior to 11.0
0084
0085 06 Oct 21 I. Hrivnacova - tag dnaphysics-V10-07-01
0086 - Migration to new G4AnalysisManager.hh header;
0087 define the default output file type (root),
0088 removed Analysis.hh.
0089
0090 19 Jul 21 I. Hrivnacova - tag dnaphysics-V10-07-00
0091 - Updated for changes in the analysis category:
0092 removed deleting of the analysis manager,
0093 as this is now done by the Geant4 kernel.
0094
0095 10 Nov 20 B. Morgan - tag dnaphysics-V10-06-00
0096 - Migration to G4RunManagerFactory.
0097
0098 12 Jan 19 S. Incerti - tag dnaphysics-V10-05-00
0099 - Updated README (test)
0100
0101 7 Nov 18 I. Hrivnacova - tag dnaphysics-V10-04-04
0102 - Updated plot.C for reading ntuples merged with row-wise mode
0103 (now default)
0104
0105 17 Aug 18 S. Incerti - tag dnaphysics-V10-04-03
0106 - updated README
0107
0108 26 Jul 18 S. Incerti - tag dnaphysics-V10-04-02
0109 - activated ntuple merging
0110
0111 22 Jul 18 S. Incerti - tag dnaphysics-V10-04-01
0112 - removed obsolete RanecuEngine
0113
0114 9 May 18 B. Morgan - tag dnaphysics-V10-04-00
0115 - Include G4Types before use of G4MULTITHREADED. For forward
0116 compatibility with move to #defines over -D for G4 preprocessor
0117 symbols
0118
0119 7 Nov 17 S. Incerti - tag dnaphysics-V10-03-15
0120 - updated plot.C
0121
0122 11 Oct 17 S. Incerti - tag dnaphysics-V10-03-14
0123 - updated flags for EM processes
0124
0125 11 Oct 17 S. Incerti - tag dnaphysics-V10-03-13
0126 - added more flags for EM processes
0127
0128 02 Oct 17 S. Incerti - tag dnaphysics-V10-03-12
0129 - added more flags for EM processes
0130
0131 16 Aug 2017 - tag dnaphysics-V10-03-11 - SI
0132 - updated numbering scheme
0133
0134 12 Aug 2017 - tag dnaphysics-V10-03-10 - SI, VI
0135 - updated plot.C with numbering
0136
0137 11 Aug 2017 - tag dnaphysics-V10-03-09 - SI, VI
0138 - retag
0139
0140 10 Aug 2017 - tag dnaphysics-V10-03-08 - SI, VI
0141 - fixed FPE, improved SteppingAction
0142
0143 09 Aug 2017 - tag dnaphysics-V10-03-07 - S. Incerti
0144 - added more variables to ntuple
0145
0146 03 Aug 2017 - tag dnaphysics-V10-03-06 - V. Ivanchneko
0147 - PhysicsList - limit high energy by 1 GeV
0148
0149 26 Jul 2017 - tag dnaphysics-V10-03-05 - S. Incerti
0150 - applied coding guidelines
0151
0152 15 Jun 2017 - tag dnaphysics-V10-03-04 - S. Incerti
0153 - added visu. to dnaphysics.in
0154
0155 08 Jun 2017 - tag dnaphysics-V10-03-03 - S. Incerti
0156 - added flag for Capture
0157
0158 08 Apr 2017 - tag dnaphysics-V10-03-02 - S. Incerti
0159 - added third plot in plot.C
0160
0161 31 Dec 2016 - tag dnaphysics-V10-03-01 - S. Incerti
0162 - fixed compilation
0163
0164 30 Dec 2016 - tag dnaphysics-V10-03-00 - S. Incerti
0165 - updated numbering schemme in SteppingAction & README files
0166
0167 30 Sep 2016 - tag dnaphysics-V10-02-05 - S. Incerti
0168 - PhysicsList - added explanations
0169
0170 22 July 2016 - tag dnaphysics-V10-02-04 - V. Ivanchenko
0171 - PhysicsList - use G4EmDNAPhysicsActivator
0172
0173 09 July 2016 - tag dnaphysics-V10-02-03 - S. Incerti
0174 - updated README
0175
0176 03 June 2016 - tag dnaphysics-V10-02-02 - M. Karamitros
0177 - SteppingAction: add label for solvation
0178 - dnaphysics.cc: second arg is nb of threads
0179
0180 02 June 2016 - tag dnaphysics-V10-02-01 - V. Ivanchenko
0181 - DetectorConstructor, DetectorMessenger - ensure that geometry
0182 is created once, material may be changed for next runs
0183 - /run/initialise moved from the code to macro
0184 - DNA physics configuration is moved from the code to macro
0185
0186 28 May 2016 - tag dnaphysics-V10-02-00 - S. Incerti
0187 - added flagProcess value for electron capture
0188
0189 13 November 2015 - tag dnaphysics-V10-01-04 - V. Ivanchenko
0190 - use G4EmModelActivator to define DNA physics
0191
0192 22 October 2015 - tag dnaphysics-V10-01-03 - S. Incerti
0193 - adapted plot.C to ROOT 6.X
0194
0195 07 October 2015 - tag dnaphysics-V10-01-02 - S. Incerti, P. Pater
0196 - added ignoreCut UI command in dnaphysics.in
0197
0198 17 August 2015 - tag dnaphysics-V10-01-01 - S. Incerti
0199 - Switched to G4UIExecutive
0200
0201 17 August 2015 - tag dnaphysics-V10-01-00 - S. Incerti
0202 - Switched to OGLIXm in vis.mac
0203
0204 24 November 2014 - tag dnaphysics-V10-00-04 - M. Karamitros
0205 - Retag before release
0206
0207 6 November 2014 - I. Hrivnacova
0208 - Fixes in README files
0209
0210 1 November 2014 - tag dnaphysics-V10-00-03 - M. Karamitros
0211 - Copy plot.C to bin directory
0212
0213 23 October 2014 - tag dnaphysics-V10-00-02 - M. Karamitros
0214 - READMEs updated
0215
0216 22 October 2014 - tag dnaphysics-V10-00-01 - M. Karamitros
0217 - Move to extended category and apply coding guidelines
0218 - Clean PhysicsList, DetectorConstuction, SteppingAction, RunAction
0219 - Add .README, missing virtuals
0220 - dna.mac -> dnaphysics.in as done in other extended examples
0221
0222 30 June 2014 - tag dnaphysics-V10-00-00 - S. Incerti
0223 - Added lines for ion in dna.mac
0224
0225 03 October 2013 - tag dnaphysics-V09-06-10 - S. Incerti
0226 - Updated CMakeLists.txt
0227
0228 30 September 2013 - tag dnaphysics-V09-06-09 - I. Hrivnacova
0229 - Updated for changes in analysis:
0230 (removal of G4AnalysisManager::Create(isMaster))
0231
0232 19 August 2013 - tag dnaphysics-V09-06-08 - S. Incerti
0233 - Updated README
0234
0235 6 August 2013 - tag dnaphysics-V09-06-07 - S. Incerti
0236 - Removed unused variable in RunAction
0237
0238 1 August 2013 - tag dnaphysics-V09-06-06 - A.Dotti
0239 - Bug fix for compilation warning with clang32 - second iteration
0240
0241 30 July 2013 - tag dnaphysics-V09-06-05 - A.Dotti
0242 - Bug fix for compilation warning with clang32
0243
0244 10 June 2013 - tag dnaphysics-V09-06-04 - S. Incerti
0245 - Withdraw RunAction from ActionInitialization for master
0246
0247 28 May 2013 - tag dnaphysics-V09-06-03 - S. Incerti
0248 - changed modified density
0249 - removed standard process tagging in SteppingAction
0250 - updated plot.C
0251
0252 22 May 2013 - tag dnaphysics-V09-06-02 - M. Karamitros
0253 - Migrated to MT
0254
0255 13 April 2013 - tag dnaphysics-V09-06-01 - S. Incerti
0256 - Removed unused electron capture process
0257 - Changed process naming scheme as in the "microdosimetry"
0258 advanced example
0259
0260 15 February 2013 - tag dnaphysics-V09-06-00 - S. Incerti
0261 - Changed default water definition
0262
0263 3 November 2012 - tag dnaphysics-V09-05-07 - S. Incerti
0264 - Removed shadowing in SteppingAction
0265
0266 26 October 2012 - tag dnaphysics-V09-05-06 - L. Pandola
0267 - Changed CMakeLists.txt to deal with VIS
0268
0269 26 October 2012 - tag dnaphysics-V09-05-05 - S. Incerti
0270 - Renamed executable.
0271
0272 11 October 2012 - tag dnaphysics-V09-05-04 - G. Cosmo
0273 - Explicit inclusion of units and constants headers
0274
0275 09 October 2012- tag dnaphysics-V09-05-03 - S. Incerti
0276 - cleaned main
0277
0278 09 October 2012- tag dnaphysics-V09-05-02 - S. Incerti
0279 - added more histogram variables
0280
0281 15 August 2012- tag dnaphysics-V09-05-01 - S. Incerti
0282 - added messenger for material change
0283 - switched to new analysis interface from Guy Barrand
0284
0285 11 August 2012- tag dnaphysics-V09-05-00 - S. Incerti
0286 - updated README and SteppingAction.cc files
0287
0288 05 November 2011- tag dnaphysics-V09-04-08 - S. Incerti
0289 - removed export=root option in HistoManager.cc
0290
0291 24 August2011 - tag dnaphysics-V09-04-07 - S. Incerti
0292 - Added Auger production to dna.mac
0293
0294 18 August 2011 - tag dnaphysics-V09-04-06 - S. Incerti
0295 - Removed initStep test in SteppingAction
0296
0297 16 August 2011 - tag dnaphysics-V09-04-05 - S. Incerti
0298 - Removed usage of system command
0299
0300 02 August 2011 - tag dnaphysics-V09-04-04 - S. Incerti
0301 - increased statistics in dna.mac as suggested by Gunter
0302 - added total energy deposits in ntuple
0303
0304 05 April 2011 - tag dnaphysics-V09-04-03 - S. Incerti
0305 - added comment for use of variable density material
0306
0307 17 February 2011 - tag dnaphysics-V09-04-02 - S. Incerti
0308 - switched to G4EmDNAPhysics builder
0309
0310 30 January 2011 - tag dnaphysics-V09-04-01 - S. Incerti
0311 - first version of dnaphysics example committed
