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0001 \page ExampleChem1 Example chem1
0002 
0003 ## General description
0004   
0005   This example is provided by the Geant4-DNA collaboration.
0006 
0007   These processes and models are further described at:
0008   http://geant4-dna.org
0009 
0010   Any report or published results obtained using the Geant4-DNA software shall 
0011   cite the following Geant4-DNA collaboration publications:
0012   Phys. Med. 31 (2015) 861-874
0013   Med. Phys. 37 (2010) 4692-4708
0014 
0015   How to activate chemistry code.
0016 
0017 ## GEOMETRY DEFINITION
0018  
0019   It is a simple box which represents a 'semi infinite' homogeneous medium.
0020         
0021   Two parameters define the geometry :
0022    - the material of the box -- for Geant4-DNA it has to be water.
0023    - the full size of the box.
0024                 
0025   The default geometry is constructed in DetectorConstruction class.
0026         
0027 ## PHYSICS LIST
0028   
0029   PhysicsList is Geant4 modular physics list using G4EmDNAPhysics & 
0030   G4EmDNAChemistry constructors.
0031          
0032 ## AN EVENT: THE PRIMARY GENERATOR
0033  
0034   The primary kinematic consists of a single particle starting at the center of 
0035   the box. The type of the particle and its energy are set in the 
0036   PrimaryGeneratorAction class, and can be changed via the G4 build-in commands 
0037   of G4ParticleGun class.
0038   The chemistry module is triggered in the StackingAction class when all 
0039   physical tracks have been processed.
0040 
0041 ## OUTPUT
0042 
0043   Physics initialization and the defined reaction table are printed.
0044   G4ITStepManager processes the chemical stage time step after time step.
0045   Chemical reactions are printed.
0046 
0047 ## HOW TO START
0048 
0049   To run the example in batch mode
0050 
0051       ./chem1 -mac beam.in
0052 
0053   or
0054 
0055       ./chem1
0056 
0057   then the macro beam.in is processed by default
0058 
0059   In interactive mode, run:
0060 
0061       ./chem1 -gui
0062 
0063   or
0064 
0065       ./chem1 -gui gui.mac