moleculardna/src/ChromosomeMessenger.cc

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0025 //
0026 //
0027 #include "ChromosomeMessenger.hh"
0028
0029 #include "ChromosomeMapper.hh"
0030 #include "UtilityFunctions.hh"
0031
0032 #include "G4UIcmdWithAString.hh"
0033 #include "G4UIdirectory.hh"
0034
0035 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0036
0037 ChromosomeMessenger::ChromosomeMessenger(ChromosomeMapper* mapper)
0038   : fpChromosomeMapper(mapper),
0039     fpChromosomeDirectory(new G4UIdirectory("/chromosome/")),
0040     fpAddChromosome(new G4UIcmdWithAString("/chromosome/add", this)),
0041     fpSavePlotData(new G4UIcmdWithAString("/chromosome/plotData", this))
0042 {
0043   // Chromosomes
0044   fpChromosomeDirectory->SetGuidance("Commands for chromosome geometry.");
0045   fpAddChromosome->SetGuidance("Add a chromosomal region");
0046   fpAddChromosome->SetGuidance("format: shape name geometry-commands");
0047   fpAddChromosome->SetGuidance("shape: sphere || cyl || rod || ellipse || box");
0048   fpAddChromosome->SetGuidance("geometry-commands:");
0049   fpAddChromosome->SetGuidance("sphere: rad x y z unit [rx ry rz]");
0050   fpAddChromosome->SetGuidance("cyl: rad height x y z unit [rx ry rz]");
0051   fpAddChromosome->SetGuidance("rod: rad height x y z unit [rx ry rz]");
0052   fpAddChromosome->SetGuidance("box: x y z unit [rx ry rz]");
0053
0054   fpAddChromosome->SetGuidance
0055     ("ellipse: x-half-axis y-half-axis z-half-axis x y z unit [rx ry rz]");
0056   fpAddChromosome->SetGuidance("Rotations are optional and in degrees");
0057   fpSavePlotData->SetGuidance("Save plot data to specified file");
0058 }
0059
0060 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0061
0062 void ChromosomeMessenger::SetNewValue(G4UIcommand* command, G4String newValue)
0063 {
0064   if (command == fpAddChromosome.get()) {
0065     std::vector<G4String> values = utility::Split(newValue, ' ');
0066     G4String key = values[0];
0067     std::vector<G4String> commands;
0068     for (auto it = (values.begin() + 1); it != values.end(); it++) {
0069       commands.emplace_back(*it);
0070     }
0071     fpChromosomeMapper->AddChromosome(key, commands);
0072   }
0073   else if (command == fpSavePlotData.get()) {
0074     fpChromosomeMapper->SavePlotData(newValue);
0075   }
0076 }
0077 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......