File indexing completed on 2026-04-09 07:49:21
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0026 #include "NP.hh"
0027 #include "ssys.h"
0028 #include "sseq_index.h"
0029 #include "sstamp.h"
0030
0031 int main()
0032 {
0033 std::cout << "[sseq_index_test.cc\n" ;
0034 const char* a_path = "$AFOLD/seq.npy" ;
0035 const char* b_path = "$BFOLD/seq.npy" ;
0036 NP* a_seq = NP::LoadIfExists(a_path);
0037 NP* b_seq = NP::LoadIfExists(b_path);
0038 std::cout << "a_path " << a_path << " " << ( a_seq ? a_seq->get_lpath() : "-" ) << " a_seq " << ( a_seq ? a_seq->sstr() : "-" ) << std::endl ;
0039 std::cout << "b_path " << b_path << " " << ( b_seq ? b_seq->get_lpath() : "-" ) << " b_seq " << ( b_seq ? b_seq->sstr() : "-" ) << std::endl ;
0040 if(!(a_seq && b_seq)) return 0 ;
0041
0042 const char* _DEBUG = "sseq_index_test__DEBUG" ;
0043 int DEBUG = ssys::getenvint(_DEBUG, 0);
0044 std::cout << _DEBUG << ":" << DEBUG << "\n" ;
0045
0046 int64_t t0 = sstamp::Now();
0047
0048 sseq_index a(a_seq);
0049 int64_t t1 = sstamp::Now();
0050
0051 sseq_index b(b_seq);
0052 int64_t t2 = sstamp::Now();
0053
0054 sseq_index_ab ab(a, b);
0055 int64_t t3 = sstamp::Now();
0056
0057
0058 std::cout << " t0 " << t0 << "\n" ;
0059 std::cout << " t1 " << t1 << " (t1 - t0) " << std::setw(8) << ( t1 - t0 ) << " " << std::fixed << std::setprecision(6) << std::setw(8) << ( t1 - t0)/1e6 << "\n" ;
0060 std::cout << " t2 " << t2 << " (t2 - t1) " << std::setw(8) << ( t2 - t1 ) << " " << std::fixed << std::setprecision(6) << std::setw(8) << ( t2 - t1)/1e6 << "\n" ;
0061 std::cout << " t3 " << t3 << " (t3 - t2) " << std::setw(8) << ( t3 - t2 ) << " " << std::fixed << std::setprecision(6) << std::setw(8) << ( t3 - t2)/1e6 << "\n" ;
0062
0063 if( DEBUG > 0 )
0064 {
0065 std::cout << "A" << std::endl << a.desc(1000) << std::endl ;
0066 std::cout << "B" << std::endl << b.desc(1000) << std::endl ;
0067 }
0068
0069 std::cout << ab.desc() ;
0070
0071
0072 if(DEBUG > 0)
0073 {
0074 std::cout << "AB" << std::endl << ab.desc("ALL") << std::endl ;
0075 std::cout << "AB" << std::endl << ab.desc("C2INCL") << std::endl ;
0076 }
0077
0078
0079 ab.chi2.save("$FOLD");
0080 ab.save("$FOLD");
0081 std::cout << "]sseq_index_test.cc\n" ;
0082
0083 return 0 ;
0084 }
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