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 // SPDX-License-Identifier: LGPL-3.0-or-later
 // Copyright (C) 2022 Chao Peng
 
 /*  Fuzzy K Clustering Algorithms
  *
  *  Author: Chao Peng (ANL)
  *  Date: 10/14/2020
  *
  */
 
 #include "FuzzyKClusters.h"
 #include <exception>
 #include <iostream>
 #include <cmath>
 
 
 using namespace fkc;
 using namespace Eigen;
 
 
 // =================================================================================================
 //  KMeans Algorithm
 // =================================================================================================
 
 KMeans::KMeans() = default;
 KMeans::~KMeans() = default;
 
 MatrixXd KMeans::Fit(const MatrixXd &data, int k, double q, double epsilon, int max_iters)
 {
     auto res = Initialize(data, k, q);
 
     for (n_iters = 0; n_iters < max_iters; ++n_iters) {
         auto old_mems = mems;
         Distances(res, data);
         Memberships(q);
         FormClusters(res, data, q);
 
         if ((old_mems - mems).cwiseAbs().maxCoeff() < epsilon) {
             break;
         }
     }
 
     return res;
 }
 
 // initialize and guess the clusters
 MatrixXd KMeans::Initialize(const MatrixXd &data, int k, double q)
 {
     // resize matrices
     dists.resize(k, data.rows());
 
     // guess the cluster centers
     mems = MatrixXd::Random(k, data.rows());
     for (int j = 0; j < mems.cols(); ++j) {
         auto csum = mems.col(j).sum();
         for (int i = 0; i < mems.rows(); ++i) {
             mems(i, j) = mems(i, j)/csum;
         }
     }
 
     MatrixXd clusters(k, data.cols());
     FormClusters(clusters, data, q);
     return clusters;
 }
 
 // distance matrix (num_clusters, num_data)
 void KMeans::Distances(const MatrixXd &centroids, const MatrixXd &data)
 {
     for (int i = 0; i < centroids.rows(); ++i) {
         for (int j = 0; j < data.rows(); ++j) {
             dists(i, j) = (centroids.row(i) - data.row(j)).cwiseAbs2().sum();
         }
     }
 }
 
 // membership matrix (num_clusters, num_data)
 void KMeans::Memberships(double q)
 {
     // coeffcient-wise operation
     auto d = dists.array().pow(-1.0/(q - 1.0)).matrix();
 
     for (int j = 0; j < d.cols(); ++j) {
         auto dsum = d.col(j).sum();
         for (int i = 0; i < d.rows(); ++i) {
             mems(i, j) = d(i, j)/dsum;
         }
     }
 }
 
 // rebuild clusters
 void KMeans::FormClusters(MatrixXd &clusters, const MatrixXd &data, double q)
 {
     auto weights = mems.array().pow(q).matrix();
     for (int i = 0; i < clusters.rows(); ++i) {
         clusters.row(i) *= 0;
         for (int j = 0; j < data.rows(); ++j) {
             clusters.row(i) += data.row(j)*weights(i, j);
         }
         clusters.row(i) /= weights.row(i).sum();
     }
 }
 
 
 // =================================================================================================
 //  KRings Algorithm, extended from KMeans
 //  Reference:
 //      [1] Y. H. Man and I. Gath,
 //          "Detection and separation of ring-shaped clusters using fuzzy clustering,"
 //          in IEEE Transactions on Pattern Analysis and Machine Intelligence,
 //          vol. 16, no. 8, pp. 855-861, Aug. 1994, doi: 10.1109/34.308484.
 // =================================================================================================
 
 KRings::KRings() = default;
 KRings::~KRings() = default;
 
 MatrixXd KRings::Fit(const MatrixXd &data, int k, double q, double epsilon, int max_iters)
 {
     auto res = Initialize(data, k, q);
 
     for (n_iters = 0; n_iters < max_iters; ++n_iters) {
         auto old_mems = mems;
         Distances(res, data);
         Memberships(q);
         FormRadii(res, q);
         FormClusters(res, data, q);
 
         if ((old_mems - mems).cwiseAbs().maxCoeff() < epsilon) {
             break;
         }
     }
 
     return res;
 }
 
 // initialize and guess the clusters
 MatrixXd KRings::Initialize(const MatrixXd &data, int k, double q)
 {
     MatrixXd clusters(k, data.cols() + 1);
     auto centers = clusters.leftCols(data.cols());
 
     // call KMeans to help initialization
     KMeans fkm;
     centers = fkm.Fit(data, k, q, 1e-4, 5);
 
     dists.resize(k, data.rows());
     dists_euc = fkm.GetDistances().cwiseSqrt();
     mems = fkm.GetMemberships();
     FormRadii(clusters, q);
     return clusters;
 }
 
 // distance matrix (num_clusters, num_data)
 void KRings::Distances(const MatrixXd &centroids, const MatrixXd &data)
 {
     auto const centers = centroids.leftCols(centroids.cols() - 1);
     auto const radii = centroids.rightCols(1);
 
     for (int i = 0; i < centroids.rows(); ++i) {
         for (int j = 0; j < data.rows(); ++j) {
             dists_euc(i, j) = std::sqrt((centers.row(i) - data.row(j)).cwiseAbs2().sum());
             dists(i, j) = std::pow(dists_euc(i, j) - radii(i, 0), 2);
         }
     }
 }
 
 // rebuild clusters radii
 void KRings::FormRadii(MatrixXd &clusters, double q)
 {
     auto radii = clusters.rightCols(1);
     auto weights = mems.array().pow(q).matrix();
 
     for (int i = 0; i < weights.rows(); ++i) {
         radii(i, 0) = 0;
         for (int j = 0; j < weights.cols(); ++j) {
             radii(i, 0) += weights(i, j)*dists_euc(i, j);
         }
         radii(i, 0) /= weights.row(i).sum();
     }
 }
 
 // rebuild clusters centers
 void KRings::FormClusters(MatrixXd &clusters, const MatrixXd &data, double q)
 {
     auto centers = clusters.leftCols(data.cols());
     const auto &radii = clusters.rightCols(1);
     auto weights = mems.array().pow(q).matrix();
 
     for (int i = 0; i < weights.rows(); ++i) {
         MatrixXd icenter = centers.row(i);
         centers.row(i) *= 0;
         for (int j = 0; j < weights.cols(); ++j) {
             double scale = radii(i, 0)/dists_euc(i, j);
             centers.row(i) += weights(i, j)*(data.row(j) - (data.row(j) - icenter)*scale);
         }
         centers.row(i) /= weights.row(i).sum();
     }
 }
 
 
 // =================================================================================================
 //  KEllipses Algorithm, extended from KRings
 //  Reference:
 //      [1] I. Gath and D. Hoory, Pattern Recognition Letters 16 (1995) 727-741,
 //          https://doi.org/10.1016/0167-8655(95)00030-K.
 // =================================================================================================
 // @TODO

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