include/Geant4/G4DNAIRT.hh

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0025 //
0026 /*
0027  * G4DNAIRT.hh
0028  *
0029  *  Created on: Jul 23, 2019
0030  *      Author: W. G. Shin
0031  *              J. Ramos-Mendez and B. Faddegon
0032 */
0033
0034 #ifndef G4DNAIRT_HH_
0035 #define G4DNAIRT_HH_
0036
0037
0038 #include "G4DNAMolecularReaction.hh"
0039 #include "G4DNAMolecularReactionTable.hh"
0040 #include "G4ITReaction.hh"
0041 #include "G4ITReactionTable.hh"
0042 #include "G4ITTrackHolder.hh"
0043 #include "G4Molecule.hh"
0044 #include "G4MoleculeTable.hh"
0045 #include "G4ParticleChange.hh"
0046 #include "G4ThreeVector.hh"
0047 #include "G4VDNAReactionModel.hh"
0048 #include "G4VITReactionProcess.hh"
0049 #include "globals.hh"
0050
0051 #include "AddClone_def.hh"
0052
0053 #include <map>
0054 #include <vector>
0055
0056 class G4DNAMolecularReactionTable;
0057 class G4VDNAReactionModel;
0058 class G4ErrorFunction;
0059
0060 class G4DNAIRT : public G4VITReactionProcess
0061 {
0062 public:
0063
0064     G4DNAIRT();
0065     explicit G4DNAIRT(G4VDNAReactionModel*);
0066     ~G4DNAIRT() override;
0067     G4DNAIRT(const G4DNAIRT& other) = delete;
0068     G4DNAIRT& operator=(const G4DNAIRT& other) = delete;
0069
0070     G4bool TestReactibility(const G4Track&,
0071                             const G4Track&,
0072                             G4double ,
0073                             G4bool ) override;
0074     std::vector<std::unique_ptr<G4ITReactionChange>> FindReaction(G4ITReactionSet*, const G4double, const G4double, const G4bool) override;
0075     std::unique_ptr<G4ITReactionChange> MakeReaction(const G4Track&, const G4Track&) override;
0076
0077     void SetReactionModel(G4VDNAReactionModel*);
0078
0079     void Initialize() override;
0080     void SpaceBinning();
0081     void IRTSampling();
0082     void Sampling(G4Track*);
0083
0084     G4double GetIndependentReactionTime(const G4MolecularConfiguration*, const G4MolecularConfiguration*, G4double);
0085     G4int FindBin(G4int, G4double, G4double, G4double);
0086     G4double SamplePDC(G4double , G4double );
0087
0088 protected:
0089     const G4DNAMolecularReactionTable*& fMolReactionTable;
0090     G4VDNAReactionModel* fpReactionModel;
0091
0092 private:
0093     G4ITTrackHolder* fTrackHolder;
0094     G4ITReactionSet* fReactionSet;
0095     G4ErrorFunction* erfc;
0096
0097     std::map<G4int,std::map<G4int,std::map<G4int,std::vector<G4Track*>>>> spaceBinned;
0098
0099     G4double fRCutOff;
0100     G4double timeMin;
0101     G4double timeMax;
0102
0103     G4double fXMin, fYMin, fZMin;
0104     G4double fXMax, fYMax, fZMax;
0105     G4int fNx, fNy, fNz;
0106     G4int xiniIndex, yiniIndex, ziniIndex;
0107     G4int xendIndex, yendIndex, zendIndex;
0108 };
0109
0110 #endif /* G4DNAIRT_HH_ */