include/Geant4/G4DNADamage.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
0011 // * Neither the authors of this software system, nor their employing *
0012 // * institutes,nor the agencies providing financial support for this *
0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
0016 // * for the full disclaimer and the limitation of liability.         *
0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 //
0027 // Author: Mathieu Karamitros
0028
0029 // The code is developed in the framework of the ESA AO7146
0030 //
0031 // We would be very happy hearing from you, send us your feedback! :)
0032 //
0033 // In order for Geant4-DNA to be maintained and still open-source,
0034 // article citations are crucial.
0035 // If you use Geant4-DNA chemistry and you publish papers about your software,
0036 // in addition to the general paper on Geant4-DNA:
0037 //
0038 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
0039 //
0040 // we would be very happy if you could please also cite the following
0041 // reference papers on chemistry:
0042 //
0043 // J. Comput. Phys. 274 (2014) 841-882
0044 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
0045
0046 #ifndef G4DNADAMAGE_HH
0047 #define G4DNADAMAGE_HH 1
0048
0049 #include "G4Molecule.hh"
0050
0051 class G4VDNAHit
0052 {
0053 public :
0054     G4VDNAHit()= default;
0055     virtual ~G4VDNAHit()= default;
0056 };
0057
0058 class G4DNAIndirectHit : public G4VDNAHit
0059 {
0060 public :
0061     G4DNAIndirectHit(const G4String& baseName, const G4Molecule* molecule,
0062                      const G4ThreeVector& position, G4double time);
0063     ~G4DNAIndirectHit() override;
0064
0065     inline const G4Molecule* GetMolecule() {return fpMolecule;}
0066     inline const G4ThreeVector& GetPosition() {return fPosition;}
0067     inline const G4String& GetBaseName() {return fBaseName;}
0068     inline double GetTime() {return fTime;}
0069
0070     void Print();
0071
0072 protected :
0073     const G4Molecule* fpMolecule;
0074     G4ThreeVector fPosition;
0075     G4double fTime;
0076     G4String fBaseName;
0077 };
0078
0079 class G4DNADamage
0080 {
0081 public:
0082     static G4DNADamage* Instance();
0083     static void DeleteInstance();
0084
0085     virtual void Reset();
0086
0087     //void AddDirectDamage();
0088     virtual void AddIndirectDamage(const G4String& baseName,
0089                                    const G4Molecule* molecule,
0090                                    const G4ThreeVector& position,
0091                                    G4double time);
0092
0093     inline const std::vector<G4DNAIndirectHit*>* GetIndirectHits();
0094     inline virtual G4int GetNIndirectHits() const
0095     {
0096         if(fJustCountDamage)
0097             return fNIndirectDamage;
0098
0099         return (G4int)fIndirectHits.size();
0100     }
0101
0102     inline virtual void SetOnlyCountDamage(G4bool flag = true)
0103     {
0104         fJustCountDamage = flag;
0105     }
0106
0107     inline virtual G4bool OnlyCountDamage() const
0108     {
0109         return fJustCountDamage;
0110     }
0111
0112 protected :
0113     G4DNADamage();
0114     static G4ThreadLocal G4DNADamage* fpInstance;
0115     virtual ~G4DNADamage();
0116
0117     G4bool fJustCountDamage;
0118     G4int fNIndirectDamage;
0119     std::vector<G4DNAIndirectHit*> fIndirectHits;
0120     std::map<G4Molecule, const G4Molecule*> fMolMap;
0121 };
0122
0123 inline const std::vector<G4DNAIndirectHit*>* G4DNADamage::GetIndirectHits()
0124 {
0125     return &fIndirectHits;
0126 }
0127
0128 #endif // G4DNADAMAGES_HH