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 // This file is part of the Acts project.
 //
 // Copyright (C) 2021 CERN for the benefit of the Acts project
 //
 // This Source Code Form is subject to the terms of the Mozilla Public
 // License, v. 2.0. If a copy of the MPL was not distributed with this
 // file, You can obtain one at http://mozilla.org/MPL/2.0/.
 
 // SeedFinderGbts.ipp
 // TODO: update to C++17 style
 
 #include "Acts/Definitions/Algebra.hpp"  //for M_PI
 #include "Acts/Geometry/Extent.hpp"
 #include "Acts/Seeding/SeedFilter.hpp"
 #include "Acts/Seeding/SeedFinder.hpp"
 #include "Acts/Seeding/SeedFinderGbtsConfig.hpp"
 #include "Acts/Seeding/SeedFinderUtils.hpp"
 #include "Acts/Utilities/BinningType.hpp"
 
 #include <cmath>
 #include <fstream>
 #include <functional>
 #include <iostream>
 #include <list>
 #include <numeric>
 #include <type_traits>
 #include <vector>
 
 // core so in ACTS namespace
 
 namespace Acts {
 
 template <typename external_spacepoint_t>
 SeedFinderGbts<external_spacepoint_t>::SeedFinderGbts(
     const SeedFinderGbtsConfig<external_spacepoint_t>& config,
     const GbtsGeometry<external_spacepoint_t>& gbtsGeo)
     : m_config(config) {
   m_storage = new GbtsDataStorage(gbtsGeo);
 }
 
 template <typename external_spacepoint_t>
 SeedFinderGbts<external_spacepoint_t>::~SeedFinderGbts() {
   delete m_storage;
 
   m_storage = nullptr;
 }
 
 // define loadspace points function
 template <typename external_spacepoint_t>
 void SeedFinderGbts<external_spacepoint_t>::loadSpacePoints(
     const std::vector<GbtsSP<external_spacepoint_t>>& gbtsSPvect) {
   for (const auto& gbtssp : gbtsSPvect) {
     bool is_Pixel = gbtssp.isPixel();
     if (!is_Pixel) {
       continue;
     }
     m_storage->addSpacePoint(gbtssp, (m_config.m_useClusterWidth > 0));
   }
 
   m_config.m_phiSliceWidth = 2 * M_PI / m_config.m_nMaxPhiSlice;
 
   m_storage->sortByPhi();
 
   m_storage->generatePhiIndexing(1.5 * m_config.m_phiSliceWidth);
 }
 
 template <typename external_spacepoint_t>
 void SeedFinderGbts<external_spacepoint_t>::runGbts_TrackFinder(
     std::vector<GbtsTrigTracklet<external_spacepoint_t>>& vTracks,
     const Acts::RoiDescriptor& roi,
     const Acts::GbtsGeometry<external_spacepoint_t>& gbtsGeo) {
   const float min_z0 = roi.zedMinus();
   const float max_z0 = roi.zedPlus();
   const float cut_zMinU = min_z0 + m_config.maxOuterRadius * roi.dzdrMinus();
   const float cut_zMaxU = max_z0 + m_config.maxOuterRadius * roi.dzdrPlus();
   float m_minR_squ = m_config.m_tripletPtMin * m_config.m_tripletPtMin /
                      std::pow(m_config.ptCoeff, 2);  // from athena
   float m_maxCurv = m_config.ptCoeff / m_config.m_tripletPtMin;
   const float maxKappa_high_eta = 0.8 / m_minR_squ;
   const float maxKappa_low_eta = 0.6 / m_minR_squ;
 
   // 1. loop over stages
 
   int currentStage = 0;
 
   const Acts::GbtsConnector& connector = *(gbtsGeo.connector());
 
   std::vector<Acts::GbtsEdge<external_spacepoint_t>> edgeStorage;
 
   edgeStorage.reserve(m_config.MaxEdges);
 
   int nEdges = 0;
 
   for (std::map<int, std::vector<GbtsConnector::LayerGroup>>::const_iterator
            it = connector.m_layerGroups.begin();
        it != connector.m_layerGroups.end(); ++it, currentStage++) {
     // loop over L1 layers for the current stage
 
     for (const auto& layerGroup : (*it).second) {
       unsigned int dst = layerGroup.m_dst;  // n1 : inner nodes
 
       const GbtsLayer<external_spacepoint_t>* pL1 =
           gbtsGeo.getGbtsLayerByKey(dst);
 
       if (pL1 == nullptr) {
         continue;
       }
 
       for (const auto& conn :
            layerGroup.m_sources) {  // loop over L2(L1) for the current stage
 
         unsigned int src = conn->m_src;  // n2 : the new connectors
 
         const GbtsLayer<external_spacepoint_t>* pL2 =
             gbtsGeo.getGbtsLayerByKey(src);
 
         if (pL2 == nullptr) {
           continue;
         }
         int nDstBins = pL1->m_bins.size();
         int nSrcBins = pL2->m_bins.size();
 
         for (int b1 = 0; b1 < nDstBins; b1++) {  // loop over bins in Layer 1
 
           const GbtsEtaBin<external_spacepoint_t>& B1 =
               m_storage->getEtaBin(pL1->m_bins.at(b1));
 
           if (B1.empty()) {
             continue;
           }
 
           float rb1 = pL1->getMinBinRadius(b1);
 
           // 3. loops over source eta-bins
 
           for (int b2 = 0; b2 < nSrcBins; b2++) {  // loop over bins in Layer 2
 
             if (m_config.m_useEtaBinning && (nSrcBins + nDstBins > 2)) {
               if (conn->m_binTable[b1 + b2 * nDstBins] != 1) {
                 continue;  // using precomputed LUT
               }
             }
 
             const GbtsEtaBin<external_spacepoint_t>& B2 =
                 m_storage->getEtaBin(pL2->m_bins.at(b2));
 
             if (B2.empty()) {
               continue;
             }
 
             float rb2 = pL2->getMaxBinRadius(b2);
 
             // calculated delta Phi for rb1 ---> rb2 extrapolation
 
             float deltaPhi =
                 0.5f *
                 m_config
                     .m_phiSliceWidth;  // the default sliding window along phi
 
             if (m_config.m_useEtaBinning) {
               deltaPhi = 0.001f + m_maxCurv * std::fabs(rb2 - rb1);
             }
 
             unsigned int first_it = 0;
             for (typename std::vector<
                      GbtsNode<external_spacepoint_t>*>::const_iterator n1It =
                      B1.m_vn.begin();
                  n1It != B1.m_vn.end(); ++n1It) {  // loop over nodes in Layer 1
 
               GbtsNode<external_spacepoint_t>* n1 = (*n1It);
 
               if (n1->m_in.size() >= MAX_SEG_PER_NODE) {
                 continue;
               }
 
               float r1 = n1->m_spGbts.SP->r();
               float x1 = n1->m_spGbts.SP->x();
               float y1 = n1->m_spGbts.SP->y();
               float z1 = n1->m_spGbts.SP->z();
               float phi1 = std::atan(x1 / y1);
 
               float minPhi = phi1 - deltaPhi;
               float maxPhi = phi1 + deltaPhi;
 
               for (unsigned int n2PhiIdx = first_it;
                    n2PhiIdx < B2.m_vPhiNodes.size();
                    n2PhiIdx++) {  // sliding window over nodes in Layer 2
 
                 float phi2 = B2.m_vPhiNodes.at(n2PhiIdx).first;
 
                 if (phi2 < minPhi) {
                   first_it = n2PhiIdx;
                   continue;
                 }
                 if (phi2 > maxPhi) {
                   break;
                 }
 
                 GbtsNode<external_spacepoint_t>* n2 =
                     B2.m_vn.at(B2.m_vPhiNodes.at(n2PhiIdx).second);
 
                 if (n2->m_out.size() >= MAX_SEG_PER_NODE) {
                   continue;
                 }
                 if (n2->isFull()) {
                   continue;
                 }
 
                 float r2 = n2->m_spGbts.SP->r();
 
                 float dr = r2 - r1;
 
                 if (dr < m_config.m_minDeltaRadius) {
                   continue;
                 }
 
                 float z2 = n2->m_spGbts.SP->z();
 
                 float dz = z2 - z1;
                 float tau = dz / dr;
                 float ftau = std::fabs(tau);
                 if (ftau > 36.0) {
                   continue;
                 }
 
                 if (ftau < n1->m_minCutOnTau) {
                   continue;
                 }
                 if (ftau < n2->m_minCutOnTau) {
                   continue;
                 }
                 if (ftau > n1->m_maxCutOnTau) {
                   continue;
                 }
                 if (ftau > n2->m_maxCutOnTau) {
                   continue;
                 }
 
                 if (m_config.m_doubletFilterRZ) {
                   float z0 = z1 - r1 * tau;
 
                   if (z0 < min_z0 || z0 > max_z0) {
                     continue;
                   }
 
                   float zouter = z0 + m_config.maxOuterRadius * tau;
 
                   if (zouter < cut_zMinU || zouter > cut_zMaxU) {
                     continue;
                   }
                 }
 
                 float dx = n2->m_spGbts.SP->x() - x1;
                 float dy = n2->m_spGbts.SP->y() - y1;
 
                 float L2 = 1 / (dx * dx + dy * dy);
 
                 float D =
                     (n2->m_spGbts.SP->y() * x1 - y1 * n2->m_spGbts.SP->x()) /
                     (r1 * r2);
 
                 float kappa = D * D * L2;
 
                 if (ftau < 4.0) {  // eta = 2.1
                   if (kappa > maxKappa_low_eta) {
                     continue;
                   }
 
                 } else {
                   if (kappa > maxKappa_high_eta) {
                     continue;
                   }
                 }
 
                 // match edge candidate against edges incoming to n2
 
                 float exp_eta = std::sqrt(1 + tau * tau) - tau;
 
                 bool isGood =
                     n2->m_in.size() <=
                     2;  // we must have enough incoming edges to decide
 
                 if (!isGood) {
                   float uat_1 = 1.0f / exp_eta;
 
                   for (const auto& n2_in_idx : n2->m_in) {
                     float tau2 = edgeStorage.at(n2_in_idx).m_p[0];
                     float tau_ratio = tau2 * uat_1 - 1.0f;
 
                     if (std::fabs(tau_ratio) >
                         m_config.cut_tau_ratio_max) {  // bad
                                                        // match
                       continue;
                     }
                     isGood = true;  // good match found
                     break;
                   }
                 }
                 if (!isGood) {
                   continue;  // no moatch found, skip creating [n1 <- n2] edge
                 }
 
                 float curv = D * std::sqrt(L2);  // signed curvature
                 float dPhi2 = std::asin(curv * r2);
                 float dPhi1 = std::asin(curv * r1);
 
                 if (nEdges < m_config.MaxEdges) {
                   edgeStorage.emplace_back(n1, n2, exp_eta, curv, phi1 + dPhi1,
                                            phi2 + dPhi2);
 
                   n1->addIn(nEdges);
                   n2->addOut(nEdges);
 
                   nEdges++;
                 }
               }  // loop over n2 (outer) nodes
             }    // loop over n1 (inner) nodes
           }      // loop over source eta bins
         }        // loop over dst eta bins
       }          // loop over L2(L1) layers
     }            // loop over dst layers
   }              // loop over the stages of doublet making
 
   std::vector<const GbtsNode<external_spacepoint_t>*> vNodes;
 
   m_storage->getConnectingNodes(vNodes);
 
   if (vNodes.empty()) {
     return;
   }
 
   int nNodes = vNodes.size();
 
   for (int nodeIdx = 0; nodeIdx < nNodes; nodeIdx++) {
     const GbtsNode<external_spacepoint_t>* pN = vNodes.at(nodeIdx);
 
     std::vector<std::pair<float, int>> in_sort, out_sort;
     in_sort.resize(pN->m_in.size());
     out_sort.resize(pN->m_out.size());
 
     for (int inIdx = 0; inIdx < static_cast<int>(pN->m_in.size()); inIdx++) {
       int inEdgeIdx = pN->m_in.at(inIdx);
       Acts::GbtsEdge<external_spacepoint_t>* pS = &(edgeStorage.at(inEdgeIdx));
       in_sort[inIdx].second = inEdgeIdx;
       in_sort[inIdx].first = pS->m_p[0];
     }
     for (int outIdx = 0; outIdx < static_cast<int>(pN->m_out.size());
          outIdx++) {
       int outEdgeIdx = pN->m_out.at(outIdx);
       Acts::GbtsEdge<external_spacepoint_t>* pS = &(edgeStorage.at(outEdgeIdx));
       out_sort[outIdx].second = outEdgeIdx;
       out_sort[outIdx].first = pS->m_p[0];
     }
 
     std::sort(in_sort.begin(), in_sort.end());
     std::sort(out_sort.begin(), out_sort.end());
 
     unsigned int last_out = 0;
 
     for (unsigned int in_idx = 0; in_idx < in_sort.size();
          in_idx++) {  // loop over incoming edges
 
       int inEdgeIdx = in_sort[in_idx].second;
 
       Acts::GbtsEdge<external_spacepoint_t>* pS = &(edgeStorage.at(inEdgeIdx));
 
       pS->m_nNei = 0;
       float tau1 = pS->m_p[0];
       float uat_1 = 1.0f / tau1;
       float curv1 = pS->m_p[1];
       float Phi1 = pS->m_p[2];
 
       for (unsigned int out_idx = last_out; out_idx < out_sort.size();
            out_idx++) {
         int outEdgeIdx = out_sort[out_idx].second;
 
         Acts::GbtsEdge<external_spacepoint_t>* pNS =
             &(edgeStorage.at(outEdgeIdx));
 
         float tau2 = pNS->m_p[0];
         float tau_ratio = tau2 * uat_1 - 1.0f;
 
         if (tau_ratio < -m_config.cut_tau_ratio_max) {
           last_out = out_idx;
           continue;
         }
         if (tau_ratio > m_config.cut_tau_ratio_max) {
           break;
         }
 
         float dPhi = pNS->m_p[3] - Phi1;
 
         if (dPhi < -M_PI) {
           dPhi += 2 * M_PI;
         } else if (dPhi > M_PI) {
           dPhi -= 2 * M_PI;
         }
 
         if (dPhi < -m_config.cut_dphi_max || dPhi > m_config.cut_dphi_max) {
           continue;
         }
 
         float curv2 = pNS->m_p[1];
         float dcurv = curv2 - curv1;
 
         if (dcurv < -m_config.cut_dcurv_max || dcurv > m_config.cut_dcurv_max) {
           continue;
         }
 
         pS->m_vNei[pS->m_nNei++] = outEdgeIdx;
         if (pS->m_nNei >= N_SEG_CONNS) {
           break;
         }
       }
     }
   }
 
   const int maxIter = 15;
 
   int maxLevel = 0;
 
   int iter = 0;
 
   std::vector<Acts::GbtsEdge<external_spacepoint_t>*> v_old;
 
   for (int edgeIndex = 0; edgeIndex < nEdges; edgeIndex++) {
     Acts::GbtsEdge<external_spacepoint_t>* pS = &(edgeStorage.at(edgeIndex));
     if (pS->m_nNei == 0) {
       continue;
     }
     v_old.push_back(pS);  // TO-DO: increment level for segments as they already
                           // have at least one neighbour
   }
 
   for (; iter < maxIter; iter++) {
     // generate proposals
     std::vector<Acts::GbtsEdge<external_spacepoint_t>*> v_new;
     v_new.clear();
 
     for (auto pS : v_old) {
       int next_level = pS->m_level;
 
       for (int nIdx = 0; nIdx < pS->m_nNei; nIdx++) {
         unsigned int nextEdgeIdx = pS->m_vNei[nIdx];
 
         Acts::GbtsEdge<external_spacepoint_t>* pN =
             &(edgeStorage.at(nextEdgeIdx));
 
         if (pS->m_level == pN->m_level) {
           next_level = pS->m_level + 1;
           v_new.push_back(pS);
           break;
         }
       }
 
       pS->m_next = next_level;  // proposal
     }
     // update
 
     int nChanges = 0;
 
     for (auto pS : v_new) {
       if (pS->m_next != pS->m_level) {
         nChanges++;
         pS->m_level = pS->m_next;
         if (maxLevel < pS->m_level) {
           maxLevel = pS->m_level;
         }
       }
     }
 
     if (nChanges == 0) {
       break;
     }
 
     v_old = std::move(v_new);
     v_new.clear();
   }
 
   int minLevel = 3;  // a triplet + 2 confirmation
 
   std::vector<Acts::GbtsEdge<external_spacepoint_t>*> vSeeds;
 
   vSeeds.reserve(m_config.MaxEdges / 2);
 
   for (int edgeIndex = 0; edgeIndex < nEdges; edgeIndex++) {
     Acts::GbtsEdge<external_spacepoint_t>* pS = &(edgeStorage.at(edgeIndex));
 
     if (pS->m_level < minLevel) {
       continue;
     }
 
     vSeeds.push_back(pS);
   }
 
   m_triplets.clear();
 
   std::sort(vSeeds.begin(), vSeeds.end(),
             typename Acts::GbtsEdge<external_spacepoint_t>::CompareLevel());
 
   if (vSeeds.empty()) {
     return;
   }
 
   // backtracking
 
   GbtsTrackingFilter<external_spacepoint_t> tFilter(m_config.m_layerGeometry,
                                                     edgeStorage);
 
   for (auto pS : vSeeds) {
     if (pS->m_level == -1) {
       continue;
     }
 
     GbtsEdgeState<external_spacepoint_t> rs(false);
 
     tFilter.followTrack(pS, rs);
 
     if (!rs.m_initialized) {
       continue;
     }
 
     if (static_cast<int>(rs.m_vs.size()) < minLevel) {
       continue;
     }
 
     std::vector<const GbtsSP<external_spacepoint_t>*> vSP;
 
     for (typename std::vector<
              Acts::GbtsEdge<external_spacepoint_t>*>::reverse_iterator sIt =
              rs.m_vs.rbegin();
          sIt != rs.m_vs.rend(); ++sIt) {
       (*sIt)->m_level = -1;  // mark as collected
 
       if (sIt == rs.m_vs.rbegin()) {
         vSP.push_back(&(*sIt)->m_n1->m_spGbts);
       }
       vSP.push_back(&(*sIt)->m_n2->m_spGbts);
     }
 
     if (vSP.size() < 3) {
       continue;
     }
 
     // making triplets
 
     unsigned int nTriplets = 0;
 
     std::vector<TrigInDetTriplet<external_spacepoint_t>> output;
 
     for (unsigned int idx_m = 1; idx_m < vSP.size() - 1; idx_m++) {
       const GbtsSP<external_spacepoint_t>& spM = *vSP.at(idx_m);
       const double pS_r = spM.SP->r();
       const double pS_x = spM.SP->x();
       const double pS_y = spM.SP->y();
       const double cosA = pS_x / pS_r;
       const double sinA = pS_y / pS_r;
 
       for (unsigned int idx_o = idx_m + 1; idx_o < vSP.size(); idx_o++) {
         const GbtsSP<external_spacepoint_t>& spO = *vSP.at(idx_o);
 
         double dx = spO.SP->x() - pS_x;
         double dy = spO.SP->y() - pS_y;
         double R2inv = 1.0 / (dx * dx + dy * dy);
         double xn = dx * cosA + dy * sinA;
         double yn = -dx * sinA + dy * cosA;
 
         const double uo = xn * R2inv;
         const double vo = yn * R2inv;
 
         for (unsigned int idx_i = 0; idx_i < idx_m; idx_i++) {
           const GbtsSP<external_spacepoint_t>& spI = *vSP.at(idx_i);
 
           dx = spI.SP->x() - pS_x;
           dy = spI.SP->y() - pS_y;
           R2inv = 1.0 / (dx * dx + dy * dy);
 
           xn = dx * cosA + dy * sinA;
           yn = -dx * sinA + dy * cosA;
 
           const double ui = xn * R2inv;
           const double vi = yn * R2inv;
 
           // 1. pT estimate
 
           const double du = uo - ui;
           if (du == 0.0) {
             continue;
           }
           const double A = (vo - vi) / du;
           const double B = vi - A * ui;
           const double R_squ = (1 + A * A) / (B * B);
 
           if (R_squ < m_minR_squ) {
             continue;
           }
 
           // 2. d0 cut
 
           const double fabs_d0 = std::abs(pS_r * (B * pS_r - A));
 
           if (fabs_d0 > m_config.m_tripletD0Max) {
             continue;
           }
 
           // 3. phi0 cut
 
           // if (!roi.isFullscan()) {
           //   const double uc = 2 * B * pS_r - A;
           //   // const double phi0 = std::atan2(sinA - uc * cosA, cosA + uc *
           //   sinA);
           //   //           if ( !RoiUtil::containsPhi( *roiDescriptor, phi0 ) )
           //   {
           //   //             continue;
           //   //           }
           // }
 
           // 4. add new triplet
 
           const double Q = fabs_d0 * fabs_d0;
 
           output.emplace_back(spI, spM, spO, Q);
 
           nTriplets++;
 
           if (nTriplets >= m_config.m_maxTripletBufferLength) {
             break;
           }
         }
         if (nTriplets >= m_config.m_maxTripletBufferLength) {
           break;
         }
       }
       if (nTriplets >= m_config.m_maxTripletBufferLength) {
         break;
       }
     }
 
     if (output.empty()) {
       continue;
     }
 
     vTracks.emplace_back(vSP, output);
   }
 }
 
 template <typename external_spacepoint_t>
 template <typename output_container_t>
 void SeedFinderGbts<external_spacepoint_t>::createSeeds(
     const Acts::RoiDescriptor& roi,
     const Acts::GbtsGeometry<external_spacepoint_t>& gbtsGeo,
     output_container_t& out_cont) {
   std::vector<GbtsTrigTracklet<external_spacepoint_t>>
       vTracks;  // make empty vector
 
   vTracks.reserve(5000);
 
   runGbts_TrackFinder(vTracks, roi, gbtsGeo);  // returns filled vector
 
   if (vTracks.empty()) {
     return;
   }
 
   m_triplets.clear();  // member of class , saying not declared, maybe public?
 
   for (auto& track : vTracks) {
     for (auto& seed : track.m_seeds) {  // access member of GbtsTrigTracklet
 
       float newQ = seed.Q();  // function of TrigInDetTriplet
       if (m_config.m_LRTmode) {
         // In LRT mode penalize pixels in Triplets
         if (seed.s1().isPixel()) {
           newQ += 1000;  // functions of TrigSiSpacePointBase
         }
         if (seed.s2().isPixel()) {
           newQ += 1000;
         }
         if (seed.s3().isPixel()) {
           newQ += 1000;
         }
       } else {
         // In normal (non LRT) mode penalise SSS by 1000, PSS (if enabled) and
         // PPS by 10000
         if (seed.s3().isSCT()) {
           newQ += seed.s1().isSCT() ? 1000.0 : 10000.0;
         }
       }
       seed.Q(newQ);
       m_triplets.emplace_back(seed);
     }
   }
   vTracks.clear();
 
   for (auto& triplet : m_triplets) {
     const external_spacepoint_t* S1 =
         triplet.s1().SP;  // triplet-> GbtsSP-> simspacepoint
     const external_spacepoint_t* S2 = triplet.s2().SP;
     const external_spacepoint_t* S3 = triplet.s3().SP;
 
     // input to seed
     float Vertex = 0;
     float Quality = triplet.Q();
     // make a new seed, add to vector of seeds
     out_cont.emplace_back(*S1, *S2, *S3, Vertex, Quality);
   }
 }
 
 // outer called in alg
 template <typename external_spacepoint_t>
 std::vector<Seed<external_spacepoint_t>>
 SeedFinderGbts<external_spacepoint_t>::createSeeds(
     const Acts::RoiDescriptor& roi,
     const Acts::GbtsGeometry<external_spacepoint_t>& gbtsGeo) {
   std::vector<seed_t> r;
   createSeeds(roi, gbtsGeo, r);
   return r;
 }
 
 }  // namespace Acts

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