pdb4dna/include/EventAction.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
0011 // * Neither the authors of this software system, nor their employing *
0012 // * institutes,nor the agencies providing financial support for this *
0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
0016 // * for the full disclaimer and the limitation of liability.         *
0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 // This example is provided by the Geant4-DNA collaboration
0027 // Any report or published results obtained using the Geant4-DNA software
0028 // shall cite the following Geant4-DNA collaboration publication:
0029 // Med. Phys. 37 (2010) 4692-4708
0030 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
0031 //                  Bank (PDB) description for Geant4-DNA Monte-Carlo
0032 //                  simulations (submitted to Comput. Phys. Commun.)
0033 // The Geant4-DNA web site is available at http://geant4-dna.org
0034 //
0035 //
0036 /// \file EventAction.hh
0037 /// \brief Definition of the EventAction class
0038
0039 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0040
0041 #ifndef EventAction_h
0042 #  define EventAction_h 1
0043
0044 #  include "G4UserEventAction.hh"
0045 #  include "globals.hh"
0046
0047 #  include <map>
0048
0049 class EventActionMessenger;
0050
0051 class EventAction : public G4UserEventAction
0052 {
0053   public:
0054     EventAction();
0055     ~EventAction();
0056
0057   public:
0058     virtual void BeginOfEventAction(const G4Event*);
0059     virtual void EndOfEventAction(const G4Event*);
0060
0061     void AddEdepEvent(G4double edep) { fTotalEnergyDeposit += edep; };
0062     G4double GetEdepEvent() { return fTotalEnergyDeposit; };
0063
0064     void AddEdepToNucleotide(G4int numStrand, G4int numNucl, G4double edep)
0065     {
0066       if (numStrand == 1) {
0067         fEdepStrand1[numNucl] += edep;
0068       }
0069       else {
0070         fEdepStrand2[numNucl] += edep;
0071       }
0072     }
0073
0074     void SetEnergyThresForSSB(G4double val) { fThresEdepForSSB = val; };
0075     void SetDistanceThresForDSB(G4int val) { fThresDistForDSB = val; };
0076
0077   private:
0078     // total energy deposit per event
0079     G4double fTotalEnergyDeposit;
0080     // map: first strand (G4int : nucleotide ID, G4double : energy deposit)
0081     std::map<G4int, G4double> fEdepStrand1;
0082     // map: second strand (G4int : nucleotide ID, G4double : energy deposit)
0083     std::map<G4int, G4double> fEdepStrand2;
0084     // Min energy to consider single strand break
0085     G4double fThresEdepForSSB;
0086     // Max distance to consider double strand break
0087     G4int fThresDistForDSB;
0088
0089     EventActionMessenger* fpEventMessenger;
0090
0091     // Compute Strand breaks from energy deposits in DNA strands
0092     void ComputeStrandBreaks(G4int*);
0093 };
0094
0095 #endif
0096
0097 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......