pdb4dna/include/DetectorConstruction.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
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0024 // ********************************************************************
0025 //
0026 // This example is provided by the Geant4-DNA collaboration
0027 // Any report or published results obtained using the Geant4-DNA software
0028 // shall cite the following Geant4-DNA collaboration publication:
0029 // Med. Phys. 37 (2010) 4692-4708
0030 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
0031 //                  Bank (PDB) description for Geant4-DNA Monte-Carlo
0032 //                  simulations (submitted to Comput. Phys. Commun.)
0033 // The Geant4-DNA web site is available at http://geant4-dna.org
0034 //
0035 // --------------------------------------------------------------
0036 // Authors: E. Delage
0037 // november 2013
0038 // --------------------------------------------------------------
0039 //
0040 //
0041 /// \file DetectorConstruction.hh
0042 /// \brief Definition of the DetectorConstruction class
0043
0044 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0045
0046 #ifndef DetectorConstruction_h
0047 #define DetectorConstruction_h 1
0048
0049 #include "G4Material.hh"
0050 #include "G4VUserDetectorConstruction.hh"
0051 #include "globals.hh"
0052
0053 class DetectorMessenger;
0054 class G4LogicalVolume;
0055 class G4VPhysicalVolume;
0056
0057 #include "PDBlib.hh"
0058
0059 /// Detector construction class to define materials and geometry.
0060
0061 class DetectorConstruction : public G4VUserDetectorConstruction
0062 {
0063   public:
0064     DetectorConstruction();
0065     virtual ~DetectorConstruction();
0066
0067     virtual G4VPhysicalVolume* Construct();
0068
0069   private:
0070     //! PDB filename
0071     G4String fPdbFileName;
0072
0073     //! Option for the visualisation
0074     unsigned short int fChosenOption;
0075
0076     //! Check if PDB file loaded
0077     unsigned short int fPdbFileStatus;
0078
0079     PDBlib fPDBlib;
0080     Molecule* fpMoleculeList;
0081     Barycenter* fpBarycenterList;
0082     G4Material* fpDefaultMaterial;
0083     G4Material* fpWaterMaterial;
0084
0085     void ConstructMaterials();
0086     void CheckMaterials();
0087     G4VPhysicalVolume* ConstructWorld();
0088     G4VPhysicalVolume* DefineVolumes(G4String filename, unsigned short int option);
0089
0090     void AtomisticView(G4LogicalVolume*, Molecule*, double atomSizeFactor);
0091     void BarycenterView(G4LogicalVolume*, Barycenter*);
0092     void ResiduesView(G4LogicalVolume*, Barycenter*);
0093     void DrawBoundingVolume(G4LogicalVolume*, Molecule*);
0094
0095     DetectorMessenger* fpMessenger;  // messenger
0096
0097     G4bool fCheckOverlaps;  // option to activate checking of volumes overlaps
0098
0099   public:
0100     // accessed by steppingAction.cc :
0101     Barycenter* GetBarycenterList();
0102     PDBlib GetPDBlib();
0103     Molecule* GetMoleculeList();
0104
0105     // accessed by DetectorConstruction.cc :
0106     void LoadPDBfile(G4String fileName);
0107     void DrawAtoms_();
0108     void DrawNucleotides_();
0109     void DrawResidues_();
0110     void BuildBoundingVolume();
0111     void DrawAtomsWithBounding_();
0112     void DrawNucleotidesWithBounding_();
0113     void DrawResiduesWithBounding_();
0114 };
0115
0116 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0117
0118 #endif