pdb4dna/include/DetectorConstruction.hh

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0025 //
0026 /// \file DetectorConstruction.hh
0027 /// \brief Definition of the DetectorConstruction class
0028
0029 // This example is provided by the Geant4-DNA collaboration
0030 // Any report or published results obtained using the Geant4-DNA software
0031 // shall cite the following Geant4-DNA collaboration publication:
0032 // Med. Phys. 37 (2010) 4692-4708
0033 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
0034 //                  Bank (PDB) description for Geant4-DNA Monte-Carlo
0035 //                  simulations (submitted to Comput. Phys. Commun.)
0036 // The Geant4-DNA web site is available at http://geant4-dna.org
0037 //
0038 // --------------------------------------------------------------
0039 // Authors: E. Delage
0040 // november 2013
0041 // --------------------------------------------------------------
0042 //
0043 //
0044
0045 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0046
0047 #ifndef DetectorConstruction_h
0048 #define DetectorConstruction_h 1
0049
0050 #include "G4Material.hh"
0051 #include "G4VUserDetectorConstruction.hh"
0052 #include "globals.hh"
0053
0054 class DetectorMessenger;
0055 class G4LogicalVolume;
0056 class G4VPhysicalVolume;
0057
0058 #include "PDBlib.hh"
0059
0060 /// Detector construction class to define materials and geometry.
0061
0062 class DetectorConstruction : public G4VUserDetectorConstruction
0063 {
0064   public:
0065     DetectorConstruction();
0066     virtual ~DetectorConstruction();
0067
0068     virtual G4VPhysicalVolume* Construct();
0069
0070   private:
0071     //! PDB filename
0072     G4String fPdbFileName;
0073
0074     //! Option for the visualisation
0075     unsigned short int fChosenOption;
0076
0077     //! Check if PDB file loaded
0078     unsigned short int fPdbFileStatus;
0079
0080     PDBlib fPDBlib;
0081     Molecule* fpMoleculeList;
0082     Barycenter* fpBarycenterList;
0083     G4Material* fpDefaultMaterial;
0084     G4Material* fpWaterMaterial;
0085
0086     void ConstructMaterials();
0087     void CheckMaterials();
0088     G4VPhysicalVolume* ConstructWorld();
0089     G4VPhysicalVolume* DefineVolumes(G4String filename, unsigned short int option);
0090
0091     void AtomisticView(G4LogicalVolume*, Molecule*, double atomSizeFactor);
0092     void BarycenterView(G4LogicalVolume*, Barycenter*);
0093     void ResiduesView(G4LogicalVolume*, Barycenter*);
0094     void DrawBoundingVolume(G4LogicalVolume*, Molecule*);
0095
0096     DetectorMessenger* fpMessenger;  // messenger
0097
0098     G4bool fCheckOverlaps;  // option to activate checking of volumes overlaps
0099
0100   public:
0101     // accessed by steppingAction.cc :
0102     Barycenter* GetBarycenterList();
0103     PDBlib GetPDBlib();
0104     Molecule* GetMoleculeList();
0105
0106     // accessed by DetectorConstruction.cc :
0107     void LoadPDBfile(G4String fileName);
0108     void DrawAtoms_();
0109     void DrawNucleotides_();
0110     void DrawResidues_();
0111     void BuildBoundingVolume();
0112     void DrawAtomsWithBounding_();
0113     void DrawNucleotidesWithBounding_();
0114     void DrawResiduesWithBounding_();
0115 };
0116
0117 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0118
0119 #endif