neuron/src/SteppingAction.cc

0001 //
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0025 //
0026 /// \file SteppingAction.cc
0027 /// \brief Implementation of the SteppingAction class
0028
0029 // This example is provided by the Geant4-DNA collaboration
0030 // Any report or published results obtained using the Geant4-DNA software
0031 // shall cite the following Geant4-DNA collaboration publication:
0032 // Med. Phys. 37 (2010) 4692-4708
0033 // and papers
0034 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
0035 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
0036 // The Geant4-DNA web site is available at http://geant4-dna.org
0037 //
0038 // -------------------------------------------------------------------
0039 // November 2016
0040 // -------------------------------------------------------------------
0041 //
0042
0043 #include "SteppingAction.hh"
0044
0045 #include "PrimaryGeneratorAction.hh"
0046 #include "Run.hh"
0047 #include "RunAction.hh"
0048
0049 #include "G4AnalysisManager.hh"
0050 #include "G4LogicalVolume.hh"
0051 #include "G4LogicalVolumeStore.hh"
0052 #include "G4PhysicalVolumeStore.hh"
0053 #include "G4RunManager.hh"
0054 #include "G4SteppingManager.hh"
0055 #include "G4SystemOfUnits.hh"
0056 #include "G4VPhysicalVolume.hh"
0057 #include "G4VTouchable.hh"
0058 #include "G4ios.hh"
0059
0060 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0061
0062 SteppingAction::SteppingAction(RunAction* run) : G4UserSteppingAction(), fRunAction(run) {}
0063
0064 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0065
0066 void SteppingAction::UserSteppingAction(const G4Step* step)
0067 {
0068   if (step->GetPostStepPoint()->GetProcessDefinedStep()->GetProcessName() != "Transportation") {
0069     G4double edepStep = step->GetTotalEnergyDeposit();
0070     G4VPhysicalVolume* volumeStep = step->GetPreStepPoint()->GetPhysicalVolume();
0071     G4TouchableHandle touchStep = step->GetPreStepPoint()->GetTouchableHandle();
0072     G4VPhysicalVolume* volumeMedium = G4PhysicalVolumeStore::GetInstance()->GetVolume("Medium");
0073     G4VPhysicalVolume* volumeSlice =
0074       G4PhysicalVolumeStore::GetInstance()->GetVolume("BoundingSlice");
0075
0076     // count processes
0077     //
0078     const G4StepPoint* endPoint = step->GetPostStepPoint();
0079     const G4VProcess* process = endPoint->GetProcessDefinedStep();
0080     Run* run = static_cast<Run*>(G4RunManager::GetRunManager()->GetNonConstCurrentRun());
0081     run->CountProcesses(process);
0082
0083     // Edep in all volume
0084     if (edepStep > 0.) {
0085       fRunAction->AddEdepALL(edepStep);
0086
0087       // Edep in a target volume (Bounding slice)
0088       if (volumeStep == volumeSlice) {
0089         fRunAction->AddEdepSlice(edepStep);
0090       }
0091
0092       // Edep in Soma
0093       if (volumeStep->GetName() == "Soma") {
0094         fRunAction->AddEdepSoma(edepStep);
0095         run->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
0096       }
0097
0098       // Edep in Dendrites
0099       if (volumeStep->GetName() == "Dendrites") {
0100         fRunAction->AddEdepDend(edepStep);
0101         run->AddDendCompart(touchStep->GetCopyNumber(), edepStep);
0102       }
0103
0104       // Edep in Axon
0105       if (volumeStep->GetName() == "Axon") {
0106         fRunAction->AddEdepAxon(edepStep);
0107         run->AddAxonCompart(touchStep->GetCopyNumber(), edepStep);
0108       }
0109
0110       // Edep in whole Neuron
0111       if (volumeStep != volumeMedium && volumeStep != volumeSlice) {
0112         fRunAction->AddEdepNeuron(edepStep);
0113       }
0114
0115       // Edep outside bounding scice
0116       if (volumeStep == volumeMedium) {
0117         fRunAction->AddEdepMedium(edepStep);
0118       }
0119     }  // end edep>0
0120   }
0121 }