neuron/src/ActionInitialization.cc

0001 //
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0025 //
0026 /// \file ActionInitialization.cc
0027 /// \brief Implementation of the ActionInitialization class
0028
0029 // This example is provided by the Geant4-DNA collaboration
0030 // Any report or published results obtained using the Geant4-DNA software
0031 // shall cite the following Geant4-DNA collaboration publication:
0032 // Med. Phys. 37 (2010) 4692-4708
0033 // and papers
0034 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
0035 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
0036 // The Geant4-DNA web site is available at http://geant4-dna.org
0037 //
0038 // -------------------------------------------------------------------
0039 // November 2016
0040 // -------------------------------------------------------------------
0041 //
0042
0043 #include "ActionInitialization.hh"
0044
0045 #include "DetectorConstruction.hh"
0046 #include "EventAction.hh"
0047 #include "PrimaryGeneratorAction.hh"
0048 #include "RunAction.hh"
0049 #include "SteppingAction.hh"
0050 #include "TrackingAction.hh"
0051
0052 #include "G4RunManager.hh"
0053 // added for chemistry
0054 #include "DetectorConstruction.hh"
0055 #include "ITSteppingAction.hh"
0056 #include "ITTrackingAction.hh"
0057 #include "ITTrackingInteractivity.hh"
0058 #include "StackingAction.hh"
0059 #include "TimeStepAction.hh"
0060
0061 #include "G4DNAChemistryManager.hh"
0062 #include "G4Scheduler.hh"
0063 #include "G4SystemOfUnits.hh"
0064 #include "G4Threading.hh"
0065 #include "G4UnitsTable.hh"
0066
0067 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0068
0069 ActionInitialization::ActionInitialization(DetectorConstruction* detector)
0070   : G4VUserActionInitialization(), fDetector(detector)
0071 {}
0072
0073 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0074
0075 ActionInitialization::~ActionInitialization() {}
0076
0077 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0078
0079 void ActionInitialization::BuildForMaster() const
0080 {
0081   // In MT mode, to be clearer, the RunAction class for the master thread might
0082   // be different than the one used for the workers.
0083   // This RunAction will be called before and after starting the
0084   // workers.
0085   // For more details, please refer to :
0086   // https://twiki.cern.ch/twiki/bin/view/Geant4/Geant4MTForApplicationDevelopers
0087   //
0088
0089   SetUserAction(new RunAction(fDetector, 0));
0090 }
0091
0092 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0093
0094 void ActionInitialization::Build() const
0095 {
0096   // G4cout << "Build for = "
0097   // << G4RunManager::GetRunManager()->GetRunManagerType()
0098   // << G4endl;
0099
0100   PrimaryGeneratorAction* kinematics = new PrimaryGeneratorAction();
0101   SetUserAction(kinematics);
0102
0103   TrackingAction* trackingAction = new TrackingAction();
0104   SetUserAction(trackingAction);
0105
0106   RunAction* runAction = new RunAction(fDetector, kinematics);
0107   SetUserAction(runAction);
0108
0109   SetUserAction(new SteppingAction(runAction));
0110   SetUserAction(new EventAction(runAction));
0111   // added
0112   SetUserAction(new StackingAction());
0113
0114   // chemistry part
0115   if (G4DNAChemistryManager::IsActivated()) {
0116     G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
0117
0118     // Uncomment and set to stop chemistry stage after:
0119     // ...given number of time steps
0120     // G4Scheduler::Instance()->SetMaxNbSteps(1000);
0121
0122     // ...OR reaching this time
0123     G4Scheduler::Instance()->SetEndTime(0.01 * nanosecond);  // default: 10 ps
0124
0125     G4Scheduler::Instance()->SetVerbose(1);  // default: 1-print reactions;
0126
0127     ITTrackingInteractivity* itInteractivity = new ITTrackingInteractivity();
0128     itInteractivity->SetUserAction(new ITSteppingAction);
0129     itInteractivity->SetUserAction(new ITTrackingAction);
0130     G4Scheduler::Instance()->SetInteractivity(itInteractivity);
0131   }
0132   /*
0133     // To output the pre-chemical stage
0134     //
0135     G4String fileName ("output");
0136
0137     if(G4RunManager::GetRunManager()->GetRunManagerType() ==
0138         G4RunManager::sequentialRM)
0139     {
0140       // write initial situation at 1 picosecond
0141       G4DNAChemistryManager::Instance()->WriteInto(fileName + ".txt");
0142     }
0143     else
0144     {
0145       G4int id = G4Threading::G4GetThreadId();
0146
0147       G4String fileName_mt = fileName;
0148       fileName_mt += G4UIcommand::ConvertToString(id);
0149       fileName_mt += ".txt";
0150
0151       G4cout << "chosen file name : " << fileName_mt << G4endl;
0152
0153       G4DNAChemistryManager::Instance()->WriteInto(fileName_mt);
0154     }
0155   */
0156 }
0157
0158 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......