Warning, /geant4/examples/extended/medical/dna/moleculardna/phase_space/phase_space_test.mac is written in an unsupported language. File is not indexed.
0001 #/process/dna/e-SolvationSubType Meesungnoen2002
0002 #/process/dna/e-SolvationSubType Ritchie1994
0003 #/process/dna/e-SolvationSubType Terrisol1990
0004
0005 /run/numberOfThreads 1
0006 #/run/verbose 2
0007 #/control/verbose 1
0008 #/dnageom/verbose 1
0009 /tracking/verbose 2
0010
0011 /chem/activate true
0012 /scheduler/verbose 0
0013 /material/verbose 2
0014
0015 /world/worldSize 10200 nm
0016 /cell/radiusSize 3 3 3 um
0017
0018 /dnageom/setSmartVoxels 1
0019 /dnageom/checkOverlaps false
0020 /scheduler/endTime 1 us
0021
0022 /dnageom/radicalKillDistance 9 nm
0023 /dnageom/interactionDirectRange 7 angstrom
0024
0025 /dnageom/placementSize 30 30 100 nm
0026 /dnageom/fractalScaling 1 1 1 nm
0027 /dnageom/definitionFile geometries/prisms200k_r3000.txt
0028 /dnageom/placementVolume prism geometries/straight-216-0.txt
0029
0030
0031 /dnageom/setVoxelPlacementAnglesAsMultiplesOfPi false
0032 /dnageom/useCustomMoleculeSizes false
0033
0034 # used default moleculeSize
0035 #/dnageom/moleculeSize
0036
0037 /dnageom/drawCellVolumes false
0038 /dnageom/activateHistoneScavenging true
0039
0040
0041 /chromosome/add cylinder sphere 3000 0 0 0 nm
0042
0043 # Damage Model
0044 /dnadamage/directDamageLower 17.5 eV
0045 /dnadamage/directDamageUpper 17.5 eV
0046
0047 /dnadamage/indirectOHBaseChance 1.0
0048 /dnadamage/indirectOHStrandChance 0.65
0049 /dnadamage/inductionOHChance 0.0
0050
0051 /dnadamage/indirectHBaseChance 1.0
0052 /dnadamage/indirectHStrandChance 0.65
0053 /dnadamage/inductionHChance 0.00
0054
0055 /dnadamage/indirectEaqBaseChance 1.0
0056 /dnadamage/indirectEaqStrandChance 0.65
0057 /dnadamage/inductionEaqChance 0.00
0058
0059 /analysisDNA/saveStrands false
0060 /analysisDNA/fragmentGap 0 # do not join
0061 #/analysisDNA/diagnosticChain
0062
0063 /run/initialize
0064
0065 # Uncomment the next line to visualize cylinder DNA geometry
0066 #/control/execute vis.mac
0067
0068 # unit tests
0069 #/dnatests/uniqueid
0070 #/dnatests/basepairs
0071 #/dnatests/chromosome
0072 #/analysisDNA/testClassifier
0073 # end unit tests
0074
0075 /run/printProgress 100
0076
0077 /primarygenerator/inputFile phase_space.csv
0078 /run/beamOn 2
