moleculardna/include/EllipticalChromosome.hh

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0025 //
0026 //
0027 /// file: EllipticalChromosome.hh
0028 /// brief: declaration file for a rod-shaped chromosome model.
0029
0030 #ifndef MOLECULAR_ELLIPTICAL_CHROMOSOME_HH
0031 #define MOLECULAR_ELLIPTICAL_CHROMOSOME_HH
0032
0033 #include "VirtualChromosome.hh"
0034
0035 #include "G4RotationMatrix.hh"
0036 #include "G4ThreeVector.hh"
0037 #include "globals.hh"
0038
0039 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0040
0041 class EllipticalChromosome : public VirtualChromosome
0042 {
0043   public:
0044     EllipticalChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&,
0045                          const G4double&);
0046
0047     EllipticalChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&,
0048                          const G4double&, const G4RotationMatrix&);
0049
0050     ~EllipticalChromosome() override;
0051
0052     G4bool PointInChromosome(G4ThreeVector const& position) override;
0053
0054     G4ThreeVector RandomPointInChromosome() override;
0055
0056     G4String GetShape() override { return fShape; };
0057     static const G4String fShape;
0058
0059     void Print() override
0060     {
0061       G4cout << "type: " << fShape << G4endl;
0062       G4cout << "semi-x: " << fSemiX << G4endl;
0063       G4cout << "semi-y: " << fSemiY << G4endl;
0064       G4cout << "semi-z: " << fSemiZ << G4endl;
0065       G4cout << "center: " << fCenter << G4endl;
0066       G4cout << "rotation: " << fRotation.getPhi() << " " << fRotation.getTheta() << " "
0067              << fRotation.getPhi() << G4endl;
0068     }
0069
0070     void SetRotation(const G4RotationMatrix& rot)
0071     {
0072       fRotation = rot;
0073       fInverseRotation = fRotation.inverse();
0074     };
0075
0076     G4RotationMatrix GetRotation() const { return fRotation; };
0077
0078     G4ThreeVector GetPosition() const { return fCenter; };
0079
0080     G4double GetSemiX() const { return fSemiX; };
0081
0082     G4double GetSemiY() const { return fSemiY; };
0083
0084     G4double GetSemiZ() const { return fSemiZ; };
0085
0086   private:
0087     G4ThreeVector fCenter;
0088     G4double fSemiX, fSemiY, fSemiZ;
0089     G4RotationMatrix fRotation, fInverseRotation;
0090 };
0091
0092 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0093
0094 #endif  // MOLECULAR_ELLIPTICAL_CHROMOSOME_HH