moleculardna/include/CylindricalChromosome.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
0011 // * Neither the authors of this software system, nor their employing *
0012 // * institutes,nor the agencies providing financial support for this *
0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
0016 // * for the full disclaimer and the limitation of liability.         *
0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 /// file: CylindricalChromosome.hh
0027 /// brief: declaration file for a cylindrical chromosome model.
0028
0029 #ifndef MOLECULAR_CYLINDRICAL_CHROMOSOME_HH
0030 #define MOLECULAR_CYLINDRICAL_CHROMOSOME_HH
0031
0032 #include "VirtualChromosome.hh"
0033
0034 #include "G4RotationMatrix.hh"
0035 #include "G4ThreeVector.hh"
0036 #include "globals.hh"
0037
0038 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0039
0040 class CylindricalChromosome : public VirtualChromosome
0041 {
0042   public:
0043     CylindricalChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&);
0044
0045     CylindricalChromosome(const G4String& name, const G4ThreeVector& pos, const G4double& radius,
0046                           const G4double& height, const G4RotationMatrix& rot);
0047
0048     ~CylindricalChromosome() override = default;
0049
0050     G4ThreeVector RandomPointInChromosome() override;
0051
0052     bool PointInChromosome(G4ThreeVector const& position) override;
0053
0054     G4String GetShape() override { return fShape; };
0055     static const G4String fShape;
0056
0057     void Print() override
0058     {
0059       G4cout << "type: " << fShape << G4endl;
0060       G4cout << "radius: " << fRadius << G4endl;
0061       G4cout << "height: " << fHeight << G4endl;
0062       G4cout << "center: " << fCenter << G4endl;
0063       G4cout << "rotation: " << fRotation.getPhi() << " " << fRotation.getTheta() << " "
0064              << fRotation.getPhi() << G4endl;
0065     }
0066
0067     void SetRotation(G4RotationMatrix rot)
0068     {
0069       fRotation = rot;
0070       fInverseRotation = fRotation.inverse();
0071     };
0072
0073     G4RotationMatrix GetRotation() const { return fRotation; };
0074
0075     G4ThreeVector GetPosition() const { return fCenter; };
0076
0077     G4double GetRadius() const { return fRadius; };
0078
0079     G4double GetHeight() const { return fHeight; };
0080
0081   protected:
0082   private:
0083     G4ThreeVector fCenter;
0084     G4double fRadius;
0085     G4double fHeight;
0086     G4RotationMatrix fRotation, fInverseRotation;
0087 };
0088
0089 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0090
0091 #endif  // MOLECULAR_CYLINDRICAL_CHROMOSOME_HH