Warning, /geant4/examples/extended/medical/dna/moleculardna/ecoli.mac is written in an unsupported language. File is not indexed.
0001 /run/verbose 2
0002 /control/verbose 1
0003 /dnageom/verbose 1
0004 #/tracking/verbose 2
0005
0006 /world/worldSize 8 um
0007 /scheduler/endTime 1 us
0008 /dnageom/setSmartVoxels 1
0009
0010 /dnageom/radicalKillDistance 4 nm
0011 /dnageom/interactionDirectRange 6 angstrom
0012
0013 /dnageom/placementSize 50 50 50 nm
0014 /dnageom/fractalScaling 50 50 50 nm
0015
0016 /dnageom/definitionFile geometries/bacteria-XFXFXFX-4.txt
0017 /dnageom/placementVolume turn geometries/8strands_50nm_turn.txt
0018 /dnageom/placementVolume turntwist geometries/8strands_50nm_turn.txt true
0019 /dnageom/placementVolume straight geometries/8strands_50nm_straight.txt
0020
0021 /chem/activate true
0022 /scheduler/verbose 0
0023
0024 /dnadamage/directDamageLower 17.5 eV
0025 /dnadamage/directDamageUpper 17.5 eV
0026
0027 /dnadamage/indirectOHBaseChance 1.0
0028 /dnadamage/indirectOHStrandChance 0.4
0029 /dnadamage/inductionOHChance 0.
0030
0031 /dnadamage/indirectHBaseChance 1.0
0032 /dnadamage/indirectHStrandChance 0.4
0033 /dnadamage/inductionHChance 0.00
0034
0035 /dnadamage/indirectEaqBaseChance 1.0
0036 /dnadamage/indirectEaqStrandChance 0.4
0037 /dnadamage/inductionEaqChance 0.00
0038
0039
0040 /chromosome/add bacteria ellipse 900 400 400 0 0 0 nm 0 0 0
0041 # /chromosome/add bacteria rod 450 950 25 0 0 nm 0 90 0
0042
0043
0044 #/chromosome/plotData chromosome.txt
0045 #/dnatests/chromosome
0046
0047 /analysisDNA/saveStrands false
0048 /analysisDNA/strandDir ./damage_maps/
0049
0050 /run/initialize
0051
0052 /dnatests/uniqueid
0053
0054 /dnatests/basepairs
0055
0056 /run/printProgress 1
0057
0058 # Source Geometry
0059
0060 /gps/pos/type Surface
0061 /gps/pos/shape Ellipsoid
0062 /gps/pos/centre 0 0 0 nm
0063 /gps/pos/halfx 900 nm
0064 /gps/pos/halfy 400 nm
0065 /gps/pos/halfz 400 nm
0066 /gps/ang/type cos
0067
0068 # Source Energy
0069
0070 /gps/particle e-
0071 /gps/energy 9.999 keV
0072
0073 /run/beamOn 10
