Warning, /geant4/examples/extended/medical/dna/moleculardna/cylinders.mac is written in an unsupported language. File is not indexed.
0001 #/process/dna/e-SolvationSubType Meesungnoen2002
0002 #/process/dna/e-SolvationSubType Ritchie1994
0003 #/process/dna/e-SolvationSubType Terrisol1990
0004
0005 /run/verbose 2
0006 /control/verbose 1
0007 /dnageom/verbose 1
0008
0009 /chem/activate true
0010 /scheduler/verbose 0
0011 /material/verbose 2
0012
0013 /world/worldSize 10200 nm
0014 /cell/radiusSize 3 3 3 um
0015
0016 /dnageom/setSmartVoxels 1
0017 /dnageom/checkOverlaps false
0018 /scheduler/endTime 1 us
0019
0020 /dnageom/radicalKillDistance 9 nm
0021 /dnageom/interactionDirectRange 7 angstrom
0022
0023 /dnageom/placementSize 30 30 100 nm
0024 /dnageom/fractalScaling 1 1 1 nm
0025 /dnageom/definitionFile geometries/prisms200k_r3000.txt
0026 /dnageom/placementVolume prism geometries/straight-216-0.txt
0027
0028
0029 /dnageom/setVoxelPlacementAnglesAsMultiplesOfPi false
0030 /dnageom/useCustomMoleculeSizes false
0031
0032 # used default moleculeSize
0033 #/dnageom/moleculeSize
0034
0035 /dnageom/drawCellVolumes false
0036 /dnageom/activateHistoneScavenging true
0037
0038
0039 /chromosome/add cylinder sphere 3000 0 0 0 nm
0040
0041 # Damage Model
0042 /dnadamage/directDamageLower 17.5 eV
0043 /dnadamage/directDamageUpper 17.5 eV
0044
0045 /dnadamage/indirectOHBaseChance 1.0
0046 /dnadamage/indirectOHStrandChance 0.65
0047 /dnadamage/inductionOHChance 0.0
0048
0049 /dnadamage/indirectHBaseChance 1.0
0050 /dnadamage/indirectHStrandChance 0.65
0051 /dnadamage/inductionHChance 0.00
0052
0053 /dnadamage/indirectEaqBaseChance 1.0
0054 /dnadamage/indirectEaqStrandChance 0.65
0055 /dnadamage/inductionEaqChance 0.00
0056
0057 /analysisDNA/saveStrands false
0058 /analysisDNA/fragmentGap 0 # do not join
0059 #/analysisDNA/diagnosticChain
0060
0061 /run/initialize
0062
0063 # Uncomment the next line to visualize cylinder DNA geometry
0064 #/control/execute vis.mac
0065
0066 # unit tests
0067 #/dnatests/uniqueid
0068 #/dnatests/basepairs
0069 #/dnatests/chromosome
0070 #/analysisDNA/testClassifier
0071 # end unit tests
0072
0073 /run/printProgress 100
0074
0075 /gps/particle e-
0076 /gps/ang/type iso
0077 /gps/energy 4.5 keV
0078 /gps/pos/type Volume
0079 /gps/pos/shape Sphere
0080 /gps/pos/radius 500 nm
0081 /gps/pos/centre 0 0 0 nm
0082 /run/beamOn 2
