dnadamage2/src/PlasmidMolecules.cc

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0025 //
0026 //
0027 // Authors: J. Naoki D. Kondo (UCSF, US)
0028 //          J. Ramos-Mendez and B. Faddegon (UCSF, US)
0029 //
0030 //
0031 /// \file PlasmidMolecules.cc
0032 /// \brief Implementation of the additional Plasmid DNA molecules
0033
0034 #include "PlasmidMolecules.hh"
0035
0036 #include "G4ParticleTable.hh"
0037 #include "G4PhysicalConstants.hh"
0038 #include "G4SystemOfUnits.hh"
0039
0040 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0041 // Deoxyribose
0042
0043 G4DNA_Deoxyribose* G4DNA_Deoxyribose::fDeoxyriboseInstance = 0;
0044 G4DNA_Deoxyribose* G4DNA_Deoxyribose::Definition()
0045 {
0046   if (fDeoxyriboseInstance != 0) return fDeoxyriboseInstance;
0047   const G4String name = "DNA_Deoxyribose";
0048
0049   G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
0050   G4ParticleDefinition* anInstance = pTable->FindParticle(name);
0051   if (anInstance == 0) {
0052     const G4String formatedName = "DNA_Deoxy^{0}";
0053
0054     G4double mass = 31.99546 * g / Avogadro * c_squared;
0055     anInstance =
0056       new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0, 1.7 * angstrom, 2);
0057
0058     ((G4MoleculeDefinition*)anInstance)->SetLevelOccupation(0);
0059     ((G4MoleculeDefinition*)anInstance)->SetFormatedName(formatedName);
0060   }
0061   fDeoxyriboseInstance = static_cast<G4DNA_Deoxyribose*>(anInstance);
0062   return fDeoxyriboseInstance;
0063 }
0064
0065 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0066 // OH_Damamged_Deoxyribose
0067
0068 G4DNA_DamagedDeoxyriboseOH* G4DNA_DamagedDeoxyriboseOH::fDamagedDeoxyriboseOHInstance = 0;
0069 G4DNA_DamagedDeoxyriboseOH* G4DNA_DamagedDeoxyriboseOH::Definition()
0070 {
0071   if (fDamagedDeoxyriboseOHInstance != 0) return fDamagedDeoxyriboseOHInstance;
0072   const G4String name = "DNA_DamagedDeoxyriboseOH";
0073
0074   G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
0075   G4ParticleDefinition* anInstance = pTable->FindParticle(name);
0076   if (anInstance == 0) {
0077     const G4String formatedName = "DamagedDeoxyriboseOH^{0}";
0078
0079     G4double mass = 31.99546 * g / Avogadro * c_squared;
0080     anInstance =
0081       new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0, 1.7 * angstrom, 2);
0082
0083     ((G4MoleculeDefinition*)anInstance)->SetLevelOccupation(0);
0084     ((G4MoleculeDefinition*)anInstance)->SetFormatedName(formatedName);
0085   }
0086   fDamagedDeoxyriboseOHInstance = static_cast<G4DNA_DamagedDeoxyriboseOH*>(anInstance);
0087   return fDamagedDeoxyriboseOHInstance;
0088 }
0089
0090 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0091 // H_Damamged_Deoxyribose
0092
0093 G4DNA_DamagedDeoxyriboseH* G4DNA_DamagedDeoxyriboseH::fDamagedDeoxyriboseHInstance = 0;
0094 G4DNA_DamagedDeoxyriboseH* G4DNA_DamagedDeoxyriboseH::Definition()
0095 {
0096   if (fDamagedDeoxyriboseHInstance != 0) return fDamagedDeoxyriboseHInstance;
0097   const G4String name = "DNA_DamagedDeoxyriboseH";
0098
0099   G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
0100   G4ParticleDefinition* anInstance = pTable->FindParticle(name);
0101   if (anInstance == 0) {
0102     const G4String formatedName = "DamagedDeoxyriboseH^{0}";
0103
0104     G4double mass = 31.99546 * g / Avogadro * c_squared;
0105     anInstance =
0106       new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0, 1.7 * angstrom, 2);
0107
0108     ((G4MoleculeDefinition*)anInstance)->SetLevelOccupation(0);
0109     ((G4MoleculeDefinition*)anInstance)->SetFormatedName(formatedName);
0110   }
0111   fDamagedDeoxyriboseHInstance = static_cast<G4DNA_DamagedDeoxyriboseH*>(anInstance);
0112   return fDamagedDeoxyriboseHInstance;
0113 }
0114
0115 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0116 // Eaq_Damamged_Deoxyribose
0117
0118 G4DNA_DamagedDeoxyriboseEAQ* G4DNA_DamagedDeoxyriboseEAQ::fDamagedDeoxyriboseEAQInstance = 0;
0119 G4DNA_DamagedDeoxyriboseEAQ* G4DNA_DamagedDeoxyriboseEAQ::Definition()
0120 {
0121   if (fDamagedDeoxyriboseEAQInstance != 0) return fDamagedDeoxyriboseEAQInstance;
0122   const G4String name = "DNA_DamagedDeoxyriboseEAQ";
0123   // search in particle table]
0124   G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
0125   G4ParticleDefinition* anInstance = pTable->FindParticle(name);
0126   if (anInstance == 0) {
0127     const G4String formatedName = "DamagedDeoxyriboseEAQ^{0}";
0128
0129     G4double mass = 31.99546 * g / Avogadro * c_squared;
0130     anInstance =
0131       new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0, 1.7 * angstrom, 2);
0132
0133     ((G4MoleculeDefinition*)anInstance)->SetLevelOccupation(0);
0134     ((G4MoleculeDefinition*)anInstance)->SetFormatedName(formatedName);
0135   }
0136   fDamagedDeoxyriboseEAQInstance = static_cast<G4DNA_DamagedDeoxyriboseEAQ*>(anInstance);
0137   return fDamagedDeoxyriboseEAQInstance;
0138 }
0139
0140 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....