dnadamage2/include/ScoreStrandBreaks.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
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0024 // ********************************************************************
0025 //
0026 /// \file ScoreStrandBreaks.hh
0027 /// \brief Definition of the ScoreStrandBreaks class
0028
0029 // This example is provided by the Geant4-DNA collaboration
0030 // dnadamage3 example is derived from the chem6 example
0031 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
0032 //
0033 // Any report or published results obtained using the Geant4-DNA software
0034 // shall cite the following Geant4-DNA collaboration publication:
0035 // Med. Phys. 37 (2010) 4692-4708
0036 // J. Comput. Phys. 274 (2014) 841-882
0037 // The Geant4-DNA web site is available at http://geant4-dna.org
0038 //
0039 // Authors: J. Naoki D. Kondo (UCSF, US)
0040 //          J. Ramos-Mendez and B. Faddegon (UCSF, US)
0041 //
0042
0043 #ifndef DNADAMAGE2_ScoreSB_h
0044 #define DNADAMAGE2_ScoreSB_h 1
0045
0046 #include "DetectorConstruction.hh"
0047 #include "MoleculeInserter.hh"
0048
0049 #include "G4DNAIRT.hh"
0050 #include "G4THitsMap.hh"
0051 #include "G4UIcmdWithADoubleAndUnit.hh"
0052 #include "G4UIcmdWithAString.hh"
0053 #include "G4UIcmdWithAnInteger.hh"
0054 #include "G4UImessenger.hh"
0055 #include "G4VPrimitiveScorer.hh"
0056
0057 class G4VAnalysisManager;
0058 class G4MolecularConfiguration;
0059
0060 typedef std::map<G4int, std::map<G4int, std::map<G4int, std::map<G4int, G4double>>>>
0061   EnergyDepositMap;
0062 typedef std::map<G4int, std::vector<std::vector<G4int>>> DamageMap;
0063
0064 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0065
0066 class ScoreStrandBreaks : public G4VPrimitiveScorer, public G4UImessenger
0067 {
0068   public:
0069     ScoreStrandBreaks(G4String name, DetectorConstruction*, G4double*);
0070     ~ScoreStrandBreaks() override;
0071
0072     void WriteWithAnalysisManager(G4VAnalysisManager*);
0073     DamageMap GetDamageMap() { return fDirectDamageMap; }
0074     void ClearDamageMap() { fDirectDamageMap.clear(); }
0075
0076     void Initialize(G4HCofThisEvent*) override;
0077     void EndOfEvent(G4HCofThisEvent*) override;
0078     void Clear();
0079     void DrawAll() override;
0080     void PrintAll() override;
0081     void AbsorbResultsFromWorkerScorer(G4VPrimitiveScorer*);
0082     void OutputAndClear(G4double, G4double);
0083     void SetNewValue(G4UIcommand*, G4String) override;
0084
0085     void ASCII(G4double, G4double);
0086
0087   private:
0088     G4int fnbOfEvents = 0;
0089     G4bool fDNAInserted = false;
0090     G4double fBreakEnergy = 17.5 * eV;
0091     G4double fEnergyDeposit = 0;
0092     G4double* fRadius = nullptr;
0093
0094     G4String fOutputName = "DirectDamageInfo";
0095     G4String fOutputType = "ascii";
0096     DamageMap fDirectDamageMap;
0097     DamageMap fIndirectDamageMap;
0098     EnergyDepositMap fEnergyDepositMap;
0099
0100     G4UIcmdWithAString* fpOutputFileUI = nullptr;
0101     G4UIcmdWithAString* fpOutputTypeUI = nullptr;
0102     G4UIcmdWithADoubleAndUnit* fpBreakEnergyUI = nullptr;
0103
0104     DetectorConstruction* fpDetector = nullptr;
0105     std::map<G4int, G4double> fDoseArray;
0106
0107     MoleculeInserter* fpGun = nullptr;
0108
0109   protected:
0110     G4bool ProcessHits(G4Step*, G4TouchableHistory*) override;
0111 };
0112
0113 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0114
0115 #endif