dnadamage2/include/PlasmidMolecules.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
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0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
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0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 //
0027 // This example is provided by the Geant4-DNA collaboration
0028 // DNADAMAGE2 example is derived from the chem6 example
0029 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
0030 //
0031 // The code is developed in the framework of the ESA AO7146
0032 //
0033 // We would be very happy hearing from you, send us your feedback! :)
0034 //
0035 // In order for Geant4-DNA to be maintained and still open-source,
0036 // article citations are crucial.
0037 // If you use Geant4-DNA chemistry and you publish papers about your software,
0038 // in addition to the general paper on Geant4-DNA:
0039 //
0040 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
0041 //
0042 // we would be very happy if you could please also cite the following
0043 // reference papers on chemistry:
0044 //
0045 // Authors: J. Naoki D. Kondo (UCSF, US)
0046 //      J. Ramos-Mendez and B. Faddegon (UCSF, US)
0047 //
0048 // J. Comput. Phys. 274 (2014) 841-882
0049 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
0050 //
0051 /// \file PlasmidMolecules.hh
0052 /// \brief Definition of the additional Plasmid DNA molecules
0053
0054 #ifndef DNADAMAGE2_PlasmidMolecules_h
0055 #define DNADAMAGE2_PlasmidMolecules_h 1
0056
0057 #include "G4MoleculeDefinition.hh"
0058 #include "G4ParticleDefinition.hh"
0059 #include "G4ios.hh"
0060 #include "globals.hh"
0061
0062 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0063
0064 class G4DNA_Deoxyribose : public G4MoleculeDefinition
0065 {
0066   private:
0067     static /*G4ThreadLocal*/ G4DNA_Deoxyribose* fDeoxyriboseInstance;
0068     G4DNA_Deoxyribose() {}
0069     ~G4DNA_Deoxyribose() override = default;
0070
0071   public:
0072     static G4DNA_Deoxyribose* Definition();
0073 };
0074
0075 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0076
0077 class G4DNA_DamagedDeoxyriboseOH : public G4MoleculeDefinition
0078 {
0079   private:
0080     static /*G4ThreadLocal*/ G4DNA_DamagedDeoxyriboseOH* fDamagedDeoxyriboseOHInstance;
0081     G4DNA_DamagedDeoxyriboseOH() {}
0082     ~G4DNA_DamagedDeoxyriboseOH() override = default;
0083
0084   public:
0085     static G4DNA_DamagedDeoxyriboseOH* Definition();
0086 };
0087
0088 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0089
0090 class G4DNA_DamagedDeoxyriboseH : public G4MoleculeDefinition
0091 {
0092   private:
0093     static /*G4ThreadLocal*/ G4DNA_DamagedDeoxyriboseH* fDamagedDeoxyriboseHInstance;
0094     G4DNA_DamagedDeoxyriboseH() {}
0095     ~G4DNA_DamagedDeoxyriboseH() override = default;
0096
0097   public:
0098     static G4DNA_DamagedDeoxyriboseH* Definition();
0099 };
0100
0101 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0102
0103 class G4DNA_DamagedDeoxyriboseEAQ : public G4MoleculeDefinition
0104 {
0105   private:
0106     static /*G4ThreadLocal*/ G4DNA_DamagedDeoxyriboseEAQ* fDamagedDeoxyriboseEAQInstance;
0107     G4DNA_DamagedDeoxyriboseEAQ() {}
0108     ~G4DNA_DamagedDeoxyriboseEAQ() override = default;
0109
0110   public:
0111     static G4DNA_DamagedDeoxyriboseEAQ* Definition();
0112 };
0113
0114 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0115
0116 #endif