dnadamage2/include/G4EmDNAChemistryForPlasmids.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
0011 // * Neither the authors of this software system, nor their employing *
0012 // * institutes,nor the agencies providing financial support for this *
0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
0016 // * for the full disclaimer and the limitation of liability.         *
0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 /// \file G4EmDNAChemistryForPlasmids.hh
0027 /// \brief Definition of the G4EmDNAChemistryForPlasmids class
0028 ///
0029 /// Definition of the Chemistry parameters with DNA reactions
0030
0031 /*
0032  * G4EmDNAChemistryForPlasmids.hh
0033  *
0034  *  Created on: Feb 10, 2021
0035  *      Author: J. Naoki D. Kondo
0036  *              W. G. Shin, J. Ramos-Mendez and B. Faddegon
0037  */
0038
0039 #ifndef DNADAMAGE2_ChemistryForPlasmids_hh
0040 #define DNADAMAGE2_ChemistryForPlasmids_hh 1
0041
0042 #include "G4UIcmdWithADouble.hh"
0043 #include "G4VPhysicsConstructor.hh"
0044 #include "G4VUserChemistryList.hh"
0045 #include "globals.hh"
0046
0047 #include <G4UImessenger.hh>
0048
0049 class G4DNAMolecularReactionTable;
0050
0051 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0052
0053 class G4EmDNAChemistryForPlasmids : public G4VUserChemistryList, public G4VPhysicsConstructor
0054 {
0055   public:
0056     G4EmDNAChemistryForPlasmids();
0057     G4EmDNAChemistryForPlasmids(G4double, G4double);
0058     ~G4EmDNAChemistryForPlasmids() override = default;
0059
0060     void ConstructParticle() override { ConstructMolecule(); }
0061
0062     void ConstructMolecule() override;
0063     void ConstructProcess() override;
0064
0065     void ConstructDissociationChannels() override;
0066     void ConstructReactionTable(G4DNAMolecularReactionTable*) override;
0067     void ConstructTimeStepModel(G4DNAMolecularReactionTable*) override;
0068
0069     void DeclareDMSOAndDNAReactions(G4DNAMolecularReactionTable*);
0070     void DeclareOxygenReactions(G4DNAMolecularReactionTable*);
0071
0072   private:
0073     G4double fDMSO = 1E-4;
0074     G4double fOxygen = 0.25E-3;
0075
0076     // G4DNAMolecularReactionTable* fReactionTable = nullptr;
0077 };
0078
0079 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0080
0081 #endif