dnadamage2/include/DetectorConstruction.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
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0024 // ********************************************************************
0025 //
0026 // This example is provided by the Geant4-DNA collaboration
0027 // DNADAMAGE2 example is derived from the chem6 example
0028 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
0029 //
0030 // Any report or published results obtained using the Geant4-DNA software
0031 // shall cite the following Geant4-DNA collaboration publication:
0032 // J. Appl. Phys. 125 (2019) 104301
0033 // Med. Phys. 45 (2018) e722-e739
0034 // J. Comput. Phys. 274 (2014) 841-882
0035 // Med. Phys. 37 (2010) 4692-4708
0036 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
0037 // The Geant4-DNA web site is available at http://geant4-dna.org
0038 //
0039 // Authors: J. Naoki D. Kondo (UCSF, US)
0040 //          J. Ramos-Mendez and B. Faddegon (UCSF, US)
0041 //
0042 /// \file DetectorConstruction.hh
0043 /// \brief Definition of the DetectorConstruction class
0044
0045 #ifndef DNADAMAGE2_DetectorConstruction_h
0046 #define DNADAMAGE2_DetectorConstruction_h 1
0047
0048 #include "PhysGeoImport.hh"
0049 #include "StackingAction.hh"
0050
0051 #include "G4MoleculeGun.hh"
0052 #include "G4Orb.hh"
0053 #include "G4UIcmdWithABool.hh"
0054 #include "G4UIcmdWithADoubleAndUnit.hh"
0055 #include "G4UIcmdWithAString.hh"
0056 #include "G4UIcmdWithAnInteger.hh"
0057 #include "G4UImessenger.hh"
0058 #include "G4VUserDetectorConstruction.hh"
0059
0060 class G4VPhysicalVolume;
0061 class G4LogicalVolume;
0062
0063 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0064
0065 class DetectorConstruction : public G4VUserDetectorConstruction, public G4UImessenger
0066 {
0067   public:
0068     DetectorConstruction();
0069     ~DetectorConstruction() override;
0070     void SetNewValue(G4UIcommand*, G4String) override;
0071     void SetSize(G4double);
0072
0073     G4VPhysicalVolume* Construct() override;
0074     void ConstructSDandField() override;
0075     void ReadOffsetFile(G4String);
0076     void AddDNAInformation(G4int, G4ThreeVector);
0077     void SetStacking(StackingAction* stack) { fpStacking = stack; }
0078     StackingAction* GetStacking() { return fpStacking; }
0079
0080     std::vector<G4String> GetDNANames() { return fDNANames; }
0081     std::vector<G4ThreeVector> GetDNAPositions() { return fDNAPositions; }
0082     std::vector<std::vector<G4int>> GetDNADetails() { return fDNADetails; }
0083
0084   private:
0085     G4UIdirectory* fDetDir = nullptr;
0086     G4UIcmdWithAString* fpOffSetFileUI = nullptr;
0087     G4UIcmdWithAString* fpPlasmidFile = nullptr;
0088     G4UIcmdWithAnInteger* fpPlasmidNbUI = nullptr;
0089     G4UIcmdWithADoubleAndUnit* fSizeCmd = nullptr;
0090     G4UIcmdWithABool* fpUseDNA = nullptr;
0091
0092     G4Orb* fPlasmidEnvelope = nullptr;
0093     G4double fWorldSize = 1 * um;
0094
0095     G4int fNbOfPlasmids = 0;
0096     G4String fPlasmidFile = "VoxelStraight.fab2g4dna";
0097     G4bool fUseDNAVolumes = false;
0098     std::vector<G4ThreeVector> fVOffset;
0099
0100     std::vector<G4String> fDNANames;
0101     std::vector<G4ThreeVector> fDNAPositions;
0102     std::vector<std::vector<G4int>> fDNADetails;
0103
0104     std::vector<G4String> fSampleDNANames;
0105     std::vector<G4ThreeVector> fSampleDNAPositions;
0106     std::vector<std::vector<G4int>> fSampleDNADetails;
0107
0108     StackingAction* fpStacking = nullptr;
0109 };
0110
0111 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0112
0113 #endif