dna/dnadamage2/dnadamage2.cc

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
0004 // *                                                                  *
0005 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
0006 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
0007 // * conditions of the Geant4 Software License,  included in the file *
0008 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
0009 // * include a list of copyright holders.                             *
0010 // *                                                                  *
0011 // * Neither the authors of this software system, nor their employing *
0012 // * institutes,nor the agencies providing financial support for this *
0013 // * work  make  any representation or  warranty, express or implied, *
0014 // * regarding  this  software system or assume any liability for its *
0015 // * use.  Please see the license in the file  LICENSE  and URL above *
0016 // * for the full disclaimer and the limitation of liability.         *
0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
0020 // * By using,  copying,  modifying or  distributing the software (or *
0021 // * any work based  on the software)  you  agree  to acknowledge its *
0022 // * use  in  resulting  scientific  publications,  and indicate your *
0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 // This example is provided by the Geant4-DNA collaboration
0027 // chem6 example is derived from chem4 and chem5 examples
0028 //
0029 // Any report or published results obtained using the Geant4-DNA software
0030 // shall cite the following Geant4-DNA collaboration publication:
0031 // J. Appl. Phys. 125 (2019) 104301
0032 // Med. Phys. 45 (2018) e722-e739
0033 // J. Comput. Phys. 274 (2014) 841-882
0034 // Med. Phys. 37 (2010) 4692-4708
0035 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
0036 // The Geant4-DNA web site is available at http://geant4-dna.org
0037 //
0038 // Authors: J. Naoki D. Kondo (UCSF, US)
0039 //          Jose Ramos-Mendez and Bruce Faddegon (UCSF, US)
0040 //
0041 /// \file dnadamage2.cc
0042 /// \brief DnaDamage2 example
0043
0044 #include "ActionInitialization.hh"
0045 #include "DetectorConstruction.hh"
0046 #include "PhysicsList.hh"
0047
0048 #include "G4DNAChemistryManager.hh"
0049 #include "G4RunManagerFactory.hh"
0050 #include "G4UIExecutive.hh"
0051 #include "G4UImanager.hh"
0052 #include "G4VisExecutive.hh"
0053
0054 /*
0055  * WARNING : Geant4 was initially not intended for this kind of application
0056  * This code is delivered as a prototype
0057  * We will be happy to hear from you, do not hesitate to send your feedback
0058  * and communicate on the difficulties you may encounter
0059  * The user interface may change in the next releases since a reiteration of
0060  * the code has started
0061  */
0062
0063 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0064
0065 G4int fSeed = 1234;
0066
0067 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
0068
0069 int main(int argc, char** argv)
0070 {
0071   G4UIExecutive* ui = 0;
0072   if (argc == 1) {
0073     ui = new G4UIExecutive(argc, argv);
0074   }
0075
0076   G4Random::setTheEngine(new CLHEP::RanecuEngine);
0077
0078   auto* runManager = G4RunManagerFactory::CreateRunManager();
0079
0080   // Set mandatory initialization classes
0081   DetectorConstruction* fpDetector = new DetectorConstruction();
0082   ActionInitialization* fpActionIni = new ActionInitialization();
0083
0084   runManager->SetUserInitialization(new PhysicsList());
0085   runManager->SetUserInitialization(fpDetector);
0086   runManager->SetUserInitialization(fpActionIni);
0087
0088   // get the pointer to the User Interface manager
0089   G4UImanager* UI = G4UImanager::GetUIpointer();
0090   G4VisManager* vM = new G4VisExecutive;
0091
0092   G4String fileName = "";
0093   G4String command = "/control/execute ";
0094
0095   if (argc == 1) {
0096     vM->Initialize();
0097     G4Random::setTheSeed(fSeed);
0098     UI->ApplyCommand("/control/execute init_vis.in");
0099     ui->SessionStart();
0100     delete ui;
0101   }
0102
0103   else if (argc == 2)  // batch mode
0104   {
0105     fileName = argv[1];
0106   }
0107
0108   else if (argc > 2) {
0109     fileName = argv[1];
0110     fSeed = atoi(argv[2]);
0111   }
0112
0113   if (argc > 1) {
0114     G4Random::setTheSeed(fSeed);
0115     UI->ApplyCommand(command + fileName);
0116   }
0117
0118   // Job termination
0119   // Free the store: user actions, physics_list and detector_description are
0120   // owned and deleted by the run manager, so they should not be deleted
0121   // in the main() program !
0122   delete runManager;
0123   delete vM;
0124   return 0;
0125 }
0126
0127 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....