dnadamage1/include/DNAParser.hh

0001 //
0002 // ********************************************************************
0003 // * License and Disclaimer                                           *
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0017 // *                                                                  *
0018 // * This  code  implementation is the result of  the  scientific and *
0019 // * technical work of the GEANT4 collaboration.                      *
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0023 // * acceptance of all terms of the Geant4 Software license.          *
0024 // ********************************************************************
0025 //
0026 // Authors: S. Meylan and C. Villagrasa (IRSN, France)
0027 // Update: H. Tran (IRSN, France) :20/12/2018
0028 //
0029
0030 #pragma once
0031 #include "DNAVolumeType.hh"
0032
0033 #include "G4MoleculeGun.hh"
0034 #include "G4String.hh"
0035 #include "G4ThreeVector.hh"
0036
0037 #include <map>
0038 #include <memory>
0039 #include <unordered_map>
0040 #include <vector>
0041
0042 class G4MoleculeGun;
0043 class G4VPhysicalVolume;
0044 class G4VSolid;
0045 class G4Material;
0046 class G4LogicalVolume;
0047 class G4Orb;
0048 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0049
0050 class DNAParser
0051 {
0052   public:
0053     using GeoData = std::unordered_map<const G4VPhysicalVolume*, DNAVolumeType>;
0054     DNAParser();
0055     ~DNAParser();
0056     G4LogicalVolume* CreateLogicVolume();
0057     G4double GetVoxelSize();
0058
0059     std::unique_ptr<G4MoleculeGun> ReleaseMoleculeGun() { return std::move(fpGun); }
0060
0061     GeoData ReleaseGeoData() { return std::move(fGeometryMap); }
0062
0063     struct Molecule;
0064
0065     void ParseFile(const std::string&);
0066
0067   private:
0068     G4double fSize;
0069     std::string fGeoName;
0070     std::map<G4String, G4double> fRadiusMap;
0071     std::map<G4String, G4double> fWaterRadiusMap;
0072     std::vector<Molecule> fMolecules;
0073     G4Material* fpWater;
0074     std::unique_ptr<G4MoleculeGun> fpGun;
0075     std::map<std::string, DNAVolumeType> fEnumMap;
0076     GeoData fGeometryMap;
0077     void EnumParser();
0078     G4VSolid* CreateCutSolid(G4Orb*, Molecule&, std::vector<Molecule>&, G4bool);
0079 };