dnadamage1/include/DNAParser.hh

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0025 //
0026 /// \file DNAParser.hh
0027 /// \brief Definition of the DNAParser class
0028
0029 // Authors: S. Meylan and C. Villagrasa (IRSN, France)
0030 // Update: H. Tran (IRSN, France) :20/12/2018
0031 //
0032
0033 #pragma once
0034 #include "DNAVolumeType.hh"
0035
0036 #include "G4MoleculeGun.hh"
0037 #include "G4String.hh"
0038 #include "G4ThreeVector.hh"
0039
0040 #include <map>
0041 #include <memory>
0042 #include <unordered_map>
0043 #include <vector>
0044
0045 class G4MoleculeGun;
0046 class G4VPhysicalVolume;
0047 class G4VSolid;
0048 class G4Material;
0049 class G4LogicalVolume;
0050 class G4Orb;
0051 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0052
0053 class DNAParser
0054 {
0055   public:
0056     using GeoData = std::unordered_map<const G4VPhysicalVolume*, DNAVolumeType>;
0057     DNAParser();
0058     ~DNAParser();
0059     G4LogicalVolume* CreateLogicVolume();
0060     G4double GetVoxelSize();
0061
0062     std::unique_ptr<G4MoleculeGun> ReleaseMoleculeGun() { return std::move(fpGun); }
0063
0064     GeoData ReleaseGeoData() { return std::move(fGeometryMap); }
0065
0066     struct Molecule;
0067
0068     void ParseFile(const std::string&);
0069
0070   private:
0071     G4double fSize;
0072     std::string fGeoName;
0073     std::map<G4String, G4double> fRadiusMap;
0074     std::map<G4String, G4double> fWaterRadiusMap;
0075     std::vector<Molecule> fMolecules;
0076     G4Material* fpWater;
0077     std::unique_ptr<G4MoleculeGun> fpGun;
0078     std::map<std::string, DNAVolumeType> fEnumMap;
0079     GeoData fGeometryMap;
0080     void EnumParser();
0081     G4VSolid* CreateCutSolid(G4Orb*, Molecule&, std::vector<Molecule>&, G4bool);
0082 };