chem5/include/ScoreSpecies.hh

0001 //
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0024 // ********************************************************************
0025 //
0026 // This example is provided by the Geant4-DNA collaboration
0027 // Any report or published results obtained using the Geant4-DNA software
0028 // shall cite the following Geant4-DNA collaboration publication:
0029 // Med. Phys. 37 (2010) 4692-4708
0030 // J. Comput. Phys. 274 (2014) 841-882
0031 // Phys. Med. Biol. 63(10) (2018) 105014-12pp
0032 // The Geant4-DNA web site is available at http://geant4-dna.org
0033 //
0034 //
0035 #ifndef CHEM5_ScoreSpecies_h
0036 #define CHEM5_ScoreSpecies_h 1
0037
0038 #include "G4THitsMap.hh"
0039 #include "G4VPrimitiveScorer.hh"
0040
0041 #include <set>
0042
0043 class G4MolecularConfiguration;
0044
0045 /** \file ScoreSpecies.hh*/
0046
0047 // Description:
0048 //   This is a primitive scorer class for scoring the radiolitic species
0049 // produced after irradiation in a water volume
0050 //
0051 // Created: 2018-09-20  by J. Ramos-Mendez based on chem4 from
0052 //                         M. Karamitros
0053
0054 class ScoreSpecies : public G4VPrimitiveScorer
0055 {
0056   public:
0057     ScoreSpecies(G4String name, G4int depth = 0);
0058
0059     virtual ~ScoreSpecies();
0060
0061     /** Add a time at which the number of species should be recorded.
0062         Default times are set up to 1 microsecond.*/
0063     inline void AddTimeToRecord(double time) { fTimeToRecord.insert(time); }
0064
0065     /**  Remove all times to record, must be reset by user.*/
0066     inline void ClearTimeToRecord() { fTimeToRecord.clear(); }
0067
0068     /** Get number of recorded events*/
0069     inline int GetNumberOfRecordedEvents() const { return fNEvent; }
0070
0071     /** Write results to an text file*/
0072     void ASCII();
0073
0074     struct SpeciesInfo
0075     {
0076         SpeciesInfo()
0077         {
0078           fNumber = 0;
0079           fG = 0.;
0080           fG2 = 0.;
0081         }
0082         SpeciesInfo(const SpeciesInfo& right)  // Species A(B);
0083         {
0084           fNumber = right.fNumber;
0085           fG = right.fG;
0086           fG2 = right.fG2;
0087         }
0088         SpeciesInfo& operator=(const SpeciesInfo& right)  // A = B
0089         {
0090           if (&right == this) return *this;
0091           fNumber = right.fNumber;
0092           fG = right.fG;
0093           fG2 = right.fG2;
0094           return *this;
0095         }
0096         int fNumber;
0097         double fG;
0098         double fG2;
0099     };
0100
0101   private:
0102     typedef const G4MolecularConfiguration Species;
0103     typedef std::map<Species*, SpeciesInfo> InnerSpeciesMap;
0104     typedef std::map<double, InnerSpeciesMap> SpeciesMap;
0105     SpeciesMap fSpeciesInfoPerTime;
0106
0107     std::set<G4double> fTimeToRecord;
0108
0109     int fNEvent;  // number of processed events
0110     double fEdep;  // total energy deposition
0111
0112   protected:
0113     virtual G4bool ProcessHits(G4Step*, G4TouchableHistory*);
0114
0115   public:
0116     virtual void Initialize(G4HCofThisEvent*);
0117     virtual void EndOfEvent(G4HCofThisEvent*);
0118     virtual void DrawAll();
0119     virtual void PrintAll();
0120     /** Method used in multithreading mode in order to merge
0121         the results*/
0122     virtual void AbsorbResultsFromWorkerScorer(G4VPrimitiveScorer*);
0123     virtual void OutputAndClear();
0124
0125     SpeciesMap GetSpeciesInfo() { return fSpeciesInfoPerTime; }
0126
0127   private:
0128     G4int fHCID;
0129     G4THitsMap<G4double>* fEvtMap;
0130 };
0131 #endif