UHDR/src/TimeStepAction.cc

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0025 //
0026 /// \file TimeStepAction.cc
0027 /// \brief Implementation of the TimeStepAction class
0028
0029 #include "TimeStepAction.hh"
0030
0031 #include "InterPulseAction.hh"
0032
0033 #include "G4DNAEventScheduler.hh"
0034 #include "G4DNAGillespieDirectMethod.hh"
0035 #include "G4DNAMolecularReactionTable.hh"
0036 #include "G4EventManager.hh"
0037 #include "G4ITLeadingTracks.hh"
0038 #include "G4MoleculeCounter.hh"
0039 #include "G4Scheduler.hh"
0040 #include "G4SystemOfUnits.hh"
0041 #include "G4Track.hh"
0042 #include "G4UnitsTable.hh"
0043 #include "G4VChemistryWorld.hh"
0044 #include "G4VPrimitiveScorer.hh"
0045
0046 TimeStepAction::TimeStepAction(const G4VChemistryWorld* pChemWorld, PulseAction* pPulse)
0047   : G4UserTimeStepAction(), fpPulse(pPulse), fpChemWorld(pChemWorld)
0048 {
0049   fpEventScheduler = std::make_unique<G4DNAEventScheduler>();
0050   fScheduler = G4Scheduler::Instance();
0051   if (dynamic_cast<InterPulseAction*>(fpPulse) != nullptr) {
0052     fPulsePeriod = dynamic_cast<InterPulseAction*>(fpPulse)->GetPulsePeriod();
0053     fNumberOfPulse = dynamic_cast<InterPulseAction*>(fpPulse)->GetNumberOfPulse();
0054   }
0055 }
0056
0057 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0058 void TimeStepAction::UserPreTimeStepAction()
0059 {
0060   fpEventScheduler->ParticleBasedCounter();
0061 }
0062
0063 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0064
0065 void TimeStepAction::UserPostTimeStepAction()
0066 {
0067   G4double T1 = 5 * CLHEP::ns;
0068   if (fpPulse != nullptr && fpPulse->IsActivedPulse()) {
0069     T1 = fpPulse->GetPulseLarger() + 5 * CLHEP::ns;
0070     if (fNumberOfPulse != 0) {
0071       fPulseID = (floor)(fScheduler->GetGlobalTime() / fPulsePeriod);
0072       T1 = fPulseID * fPulsePeriod + fpPulse->GetPulseLarger() + 5 * CLHEP::ns;
0073     }
0074   }
0075   // T1: time to start mesoscopic model
0076   if (fScheduler->GetGlobalTime() >= T1) {
0077     CompartmentBased();
0078   }
0079 }
0080
0081 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0082
0083 void TimeStepAction::UserReactionAction(const G4Track& /*a*/, const G4Track& /*b*/,
0084                                         const std::vector<G4Track*>* /*products*/)
0085 {}
0086
0087 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0088
0089 void TimeStepAction::EndProcessing()
0090 {
0091   fpEventScheduler->Reset();
0092 }
0093
0094 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0095
0096 void TimeStepAction::CompartmentBased()
0097 {
0098   fpEventScheduler->SetStartTime(fScheduler->GetGlobalTime());  // continue from globalTime
0099   fpEventScheduler->SetChangeMesh(true);
0100   fpEventScheduler->Initialize(*fpChemWorld->GetChemistryBoundary(), fPixel);
0101   fpEventScheduler->Run();
0102 }
0103
0104 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0105
0106 G4DNAEventScheduler* TimeStepAction::GetEventScheduler() const
0107 {
0108   return fpEventScheduler.get();
0109 }
0110
0111 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0112
0113 void TimeStepAction::SetInitialPixel()
0114 {
0115   auto pBoundingBox = fpChemWorld->GetChemistryBoundary();
0116   G4double Box = pBoundingBox->halfSideLengthInX();
0117   if (Box == 4 * 1.6 * um) {
0118     fPixel = 4 * 512;  // for CONV
0119   }
0120   else if (Box == 2 * 1.6 * um) {
0121     fPixel = 2 * 512;  // for CONV
0122   }
0123   else if (Box == 1.6 * um) {
0124     fPixel = 512;  // for CONV
0125   }
0126   else if (Box == 0.8 * um) {
0127     fPixel = 256;  // for FLASH
0128   }
0129   else if (Box == 0.4 * um) {
0130     fPixel = 256 / 2;  // for FLASH
0131   }
0132   else if (Box == 0.2 * um) {
0133     fPixel = 256 / 4;  // for FLASH
0134   }
0135   else {
0136     G4cout << "Box  : " << *pBoundingBox << "  Pixel : " << fPixel << G4endl;
0137     G4Exception("This chem volume is not optimized and the result may be incorrect.",
0138                 "TimeStepAction::TimeStepAction", FatalException, "");
0139   }
0140 }
0141
0142 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0143
0144 void TimeStepAction::StartProcessing()
0145 {
0146   auto currentEvent = G4EventManager::GetEventManager();
0147   if (currentEvent->GetConstCurrentEvent()->IsAborted()) {
0148     G4cout << "This event is fully aborted" << G4endl;
0149     fScheduler->Stop();
0150   }
0151   fpEventScheduler->SetVerbose(G4Scheduler::Instance()->GetVerbose());
0152   SetInitialPixel();
0153   fPulseID = 0;
0154 }
0155
0156 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......