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0001 =========================================================
0002 Geant4 - dna examples
0003 =========================================================
0004 README file
0005 ----------------------
0006
0007 This directory contains a set of Geant4-DNA examples.
0008
0009 Physics
0010
0011 - dnaphysics
0012 The dnaphysics example shows how to simulate track structures in liquid
0013 water using the Geant4-DNA physics processes and models.
0014
0015 - clustering
0016 Clustering application for direct damage extraction.
0017
0018 - icsd
0019 This example shows how to simulate ICSD and how to use cross section models
0020 for DNA materials.
0021
0022 - mfp
0023 This example shows how to simulate mean free path in liquid water.
0024
0025 - microdosimetry
0026 The microdosimetry example simulates the track of a 5 MeV proton in
0027 liquid water.
0028 Geant4 standard EM models are used in the World volume while Geant4-DNA
0029 models are used in a Target volume, declared as a Region.
0030
0031 - microprox
0032 Simulation of proximity functions in liquid water.
0033
0034 - microyz
0035 Simulation of microdosimetry spectra.
0036
0037 - radial
0038 Simulation of radial dose of ions.
0039
0040 - range
0041 Simulation of ranges.
0042
0043 - slowing
0044 Simulation of slowing down spectra.
0045
0046 - splitting
0047 Use of variance reduction to improve the computational efficiency of
0048 ionization.
0049
0050 - spower
0051 Simulation of stopping power.
0052
0053 - svalue
0054 This example shows how to simulate S-values in spheres of liquid water
0055 using the Geant4-DNA physics processes and models.
0056
0057 - wvalue
0058 This example shows how to simulate W-values in liquid water
0059 using the Geant4-DNA physics processes and models.
0060
0061 - AuNP
0062 Simulation calculates absorbed dose around AuNP
0063
0064 Chemistry
0065
0066 - chem1 Simple activation of the chemistry module.
0067 - chem2 Usage of TimeStepAction in the chemistry module.
0068 - chem3 Activate the full interactivity with the chemistry module.
0069 - chem4 Simulation of radiochemical yields with the chemistry module.
0070 - chem5 Variation of chem4, using the contructors G4EmDNAPhysics_option8 and
0071 G4EmDNAChemistry_option1.
0072 - chem6 Scoring of the radiochemical yield G defined as a function of time
0073 and LET.
0074 - scavenger
0075 Activation of the scavenging process in chemistry
0076 - UHDR Ultra High Dose Rate
0077
0078 Geometry and other
0079
0080 - pdb4dna
0081 Usage of the Protein Data Bank (PDB) file format to build geometries.
0082
0083 - wholeNuclearDNA
0084 Geometrical description of a full simplified cell nucleus.
0085
0086 - dnadamage1
0087 Damage simulation on a chromatin fiber.
0088
0089 - neuron
0090 Irradiation of a realistic neuron cell.
0091
0092 - jetcounter
0093 A setup for simulation of a typical experiment with the Jet Counter nanodosemeter
0094
0095
0096 See the README page inside each example for more detail.
