Warning, /geant4/examples/advanced/dna/moleculardna/moleculardna.out is written in an unsupported language. File is not indexed.
0001 Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Forcing G4RunManager type...
0002
0003 ############################################
0004 !!! WARNING - FPE detection is activated !!!
0005 ############################################
0006
0007
0008 ################################
0009 !!! G4Backtrace is activated !!!
0010 ################################
0011
0012
0013 **************************************************************
0014 Geant4 version Name: geant4-11-03-ref-06 (30-June-2025)
0015 Copyright : Geant4 Collaboration
0016 References : NIM A 506 (2003), 250-303
0017 : IEEE-TNS 53 (2006), 270-278
0018 : NIM A 835 (2016), 186-225
0019 WWW : http://geant4.org/
0020 **************************************************************
0021
0022 /run/verbose 2
0023 /material/verbose 2
0024 /dnageom/verbose 1
0025 /process/chem/TimeStepModel IRT_syn
0026 /chem/activate true
0027 /scheduler/verbose 0
0028 /scheduler/endTime 1 us
0029 /world/worldSize 10200 nm
0030 /cell/radiusSize 3 3 3 um
0031 /dnageom/setSmartVoxels 1
0032 /dnageom/checkOverlaps false
0033 /dnageom/placementSize 30 30 100 nm
0034 /dnageom/fractalScaling 1 1 1 nm
0035 /dnageom/definitionFile geometries/prisms200k_r3000.txt
0036 /dnageom/placementVolume prism geometries/straight-216-0.txt
0037 /dnageom/setVoxelPlacementAnglesAsMultiplesOfPi false
0038 /dnageom/useCustomMoleculeSizes false
0039 /dnageom/drawCellVolumes false
0040 /dnageom/radicalKillDistance 9 nm
0041 /dnageom/interactionDirectRange 6 angstrom
0042 /dnageom/activateHistoneScavenging true
0043 /dnadamage/directDamageLower 17.5 eV
0044 /dnadamage/directDamageUpper 17.5 eV
0045 /dnadamage/indirectOHBaseChance 1.0
0046 /dnadamage/indirectOHStrandChance 0.65
0047 /dnadamage/inductionOHChance 0.0
0048 /dnadamage/indirectHBaseChance 1.0
0049 /dnadamage/indirectHStrandChance 0.65
0050 /dnadamage/inductionHChance 0.0
0051 /dnadamage/indirectEaqBaseChance 1.0
0052 /dnadamage/indirectEaqStrandChance 0.65
0053 /dnadamage/inductionEaqChance 0.0
0054 /chromosome/add cylinder sphere 3000 0 0 0 nm
0055 /analysisDNA/saveStrands false
0056 /analysisDNA/fragmentGap 0
0057 /run/initialize
0058 userDetector->Construct() start.
0059 G4NistMaterialBuilder::FindOrBuildMaterial G4_Galactic
0060 G4NistMaterialBuilder: BuildMaterial #286
0061 New material nComponents= 1
0062 G4Material: Mean excitation energy is changed for G4_Galactic Iold= 19.2eV Inew= 21.8 eV
0063 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0064 Loading Voxel: prism
0065 Histones placed per chromosome:
0066 Chromosome Histones
0067 -----------------------------------
0068 cylinder : 0
0069 Base Pairs placed per chromosome:
0070 Chromosome Base Pairs
0071 -----------------------------------
0072 cylinder : 43200216
0073 -------------------------------
0074 Name Vols EndNodes Max(vols/node)
0075 ----------------------------------------------
0076 prism 1296 5048 1
0077 -------------------------------------------
0078 world is registered to the default region.
0079 physicsList->Construct() start.
0080 --- G4CoupledTransportation is used
0081 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0082 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0083 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0084 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0085 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0086 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0087 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0088 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0089 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0090 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0091 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0092 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0093 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0094 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0095 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0096 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0097 G4NistMaterialBuilder::FindOrBuildMaterial G4_WATER
0098 physicsList->CheckParticleList() start.
0099 physicsList->setCut() start.
0100 /run/printProgress 100
0101 /gps/pos/type Volume
0102 /gps/pos/shape Sphere
0103 /gps/pos/radius 500 nm
0104 /gps/pos/centre 0 0 0 nm
0105 /gps/particle e-
0106 /gps/energy 4.5 keV
0107 /gps/ang/type iso
0108 /run/beamOn 10
0109 =======================================================================
0110 ====== Electromagnetic Physics Parameters ========
0111 =======================================================================
0112 LPM effect enabled 1
0113 Enable creation and use of sampling tables 0
0114 Apply cuts on all EM processes 0
0115 Use combined TransportationWithMsc Disabled
0116 Use general process 0
0117 Enable linear polarisation for gamma 0
0118 Enable photoeffect sampling below K-shell 1
0119 Enable sampling of quantum entanglement 0
0120 X-section factor for integral approach 0.8
0121 Min kinetic energy for tables 10 eV
0122 Max kinetic energy for tables 600 MeV
0123 Number of bins per decade of a table 20
0124 Verbose level 1
0125 Verbose level for worker thread 0
0126 Bremsstrahlung energy threshold above which
0127 primary e+- is added to the list of secondary 100 TeV
0128 Bremsstrahlung energy threshold above which primary
0129 muon/hadron is added to the list of secondary 100 TeV
0130 Positron annihilation at rest model AllisonPositronium
0131 Enable 3 gamma annihilation on fly 0
0132 Lowest triplet kinetic energy 1 MeV
0133 Enable sampling of gamma linear polarisation 0
0134 5D gamma conversion model type 0
0135 5D gamma conversion model on isolated ion 0
0136 Use RiGe 5D e+e- pair production model by muons 0
0137 Livermore data directory epics_2017
0138 =======================================================================
0139 ====== Ionisation Parameters ========
0140 =======================================================================
0141 Step function for e+- (0.2, 0.01 mm)
0142 Step function for muons/hadrons (0.1, 0.05 mm)
0143 Step function for light ions (0.1, 0.02 mm)
0144 Step function for general ions (0.1, 0.001 mm)
0145 Lowest e+e- kinetic energy 0 eV
0146 Lowest muon/hadron kinetic energy 1 keV
0147 Use ICRU90 data 1
0148 Fluctuations of dE/dx are enabled 1
0149 Type of fluctuation model for leptons and hadrons Universal
0150 Use built-in Birks satuaration 0
0151 Build CSDA range enabled 0
0152 Use cut as a final range enabled 0
0153 Enable angular generator interface 1
0154 Max kinetic energy for CSDA tables 1 GeV
0155 Max kinetic energy for NIEL computation 0 eV
0156 Linear loss limit 0.01
0157 Read data from file for e+e- pair production by mu 0
0158 =======================================================================
0159 ====== Multiple Scattering Parameters ========
0160 =======================================================================
0161 Type of msc step limit algorithm for e+- 2
0162 Type of msc step limit algorithm for muons/hadrons 0
0163 Msc lateral displacement for e+- enabled 1
0164 Msc lateral displacement for muons and hadrons 0
0165 Urban msc model lateral displacement alg96 1
0166 Range factor for msc step limit for e+- 0.08
0167 Range factor for msc step limit for muons/hadrons 0.2
0168 Geometry factor for msc step limitation of e+- 2.5
0169 Safety factor for msc step limit for e+- 0.6
0170 Skin parameter for msc step limitation of e+- 3
0171 Lambda limit for msc step limit for e+- 1 mm
0172 Use Mott correction for e- scattering 1
0173 Factor used for dynamic computation of angular
0174 limit between single and multiple scattering 1
0175 Fixed angular limit between single
0176 and multiple scattering 3.1416 rad
0177 Upper energy limit for e+- multiple scattering 100 MeV
0178 Type of electron single scattering model 0
0179 Type of nuclear form-factor 1
0180 Screening factor 1
0181 =======================================================================
0182 ====== Atomic Deexcitation Parameters ========
0183 =======================================================================
0184 Fluorescence enabled 1
0185 Directory in G4LEDATA for fluorescence data files fluor
0186 Auger electron cascade enabled 1
0187 PIXE atomic de-excitation enabled 0
0188 De-excitation module ignores cuts 1
0189 Type of PIXE cross section for hadrons Empirical
0190 Type of PIXE cross section for e+- Livermore
0191 =======================================================================
0192 ====== DNA Physics Parameters ========
0193 =======================================================================
0194 Use fast sampling in DNA models 1
0195 Use Stationary option in DNA models 0
0196 Use DNA with multiple scattering of e- 0
0197 Use DNA e- solvation model type 11003
0198 Use DNA Chemistry model IRT_syn
0199 =======================================================================
0200
0201 ### === Deexcitation model UAtomDeexcitation is activated for 1 region:
0202 DefaultRegionForTheWorld 1 1 0
0203 ### === Auger flag: 1
0204 ### === Ignore cuts flag: 1
0205
0206 phot: for gamma SubType=12 BuildTable=0
0207 LambdaPrime table from 200 keV to 600 MeV in 72 bins
0208 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0209 LivermorePhElectric : Emin= 0 eV Emax= 600 MeV SauterGavrila Fluo
0210
0211 compt: for gamma SubType=13 BuildTable=1
0212 Lambda table from 10 eV to 1 MeV, 21 bins/decade, spline: 1
0213 LambdaPrime table from 1 MeV to 600 MeV in 57 bins
0214 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0215 LowEPComptonModel : Emin= 0 eV Emax= 20 MeV Fluo
0216 KleinNishina : Emin= 20 MeV Emax= 600 MeV Fluo
0217
0218 conv: for gamma SubType=14 BuildTable=1
0219 Lambda table from 1.022 MeV to 600 MeV, 28 bins/decade, spline: 1
0220 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0221 BetheHeitlerLPM : Emin= 0 eV Emax= 600 MeV ModifiedTsai
0222
0223 Rayl: for gamma SubType=11 BuildTable=1
0224 Lambda table from 10 eV to 150 keV, 21 bins/decade, spline: 0
0225 LambdaPrime table from 150 keV to 600 MeV in 74 bins
0226 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0227 LivermoreRayleigh : Emin= 0 eV Emax= 600 MeV CullenGenerator
0228
0229 msc: for e- SubType= 10
0230 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0231 GoudsmitSaunderson : Emin= 1 MeV Emax= 600 MeV Nbins=60 1 MeV - 600 MeV
0232 StepLim=SafetyPlus Rfact=0.08 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=3 Llim=1 mm
0233
0234 eIoni: for e- XStype:3 SubType=2
0235 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0236 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0237 StepFunction=(0.2, 0.01 mm), integ: 3, fluct: 1, linLossLim= 0.01
0238 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0239 MollerBhabha : Emin= 1 MeV Emax= 600 MeV deltaVI
0240
0241 eBrem: for e- XStype:4 SubType=3
0242 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0243 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0244 LPM flag: 1 for E > 0.6 GeV, VertexHighEnergyTh(GeV)= 100000
0245 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0246 eBremSB : Emin= 1 MeV Emax= 600 MeV AngularGen2BS
0247
0248 e-_G4DNAElectronSolvation: for e- SubType=58 BuildTable=0
0249 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0250 DNAOneStepThermalizationModel_Meesungnoen2002 : Emin= 0 eV Emax= 7.4 eV
0251 DummyModel : Emin= 7.4 eV Emax= 600 MeV
0252 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0253
0254 e-_G4DNAElastic: for e- SubType=51 BuildTable=0
0255 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0256 DNAChampionElasticModel : Emin= 0 eV Emax= 1 MeV
0257 DummyModel : Emin= 1 MeV Emax= 600 MeV
0258 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0259
0260 e-_G4DNAExcitation: for e- SubType=52 BuildTable=0
0261 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0262 DNABornExcitationModel : Emin= 0 eV Emax= 1 MeV
0263 DummyModel : Emin= 1 MeV Emax= 600 MeV
0264 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0265
0266 e-_G4DNAIonisation: for e- SubType=53 BuildTable=0
0267 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0268 DNABornIonisationModel : Emin= 0 eV Emax= 1 MeV deltaBorn Fluo
0269 DummyModel : Emin= 1 MeV Emax= 600 MeV
0270 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0271
0272 e-_G4DNAVibExcitation: for e- SubType=54 BuildTable=0
0273 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0274 DNASancheExcitationModel : Emin= 0 eV Emax= 100 eV
0275 DummyModel : Emin= 100 eV Emax= 600 MeV
0276 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0277
0278 e-_G4DNAAttachment: for e- SubType=55 BuildTable=0
0279 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0280 DNAMeltonAttachmentModel : Emin= 0 eV Emax= 13 eV
0281 DummyModel : Emin= 13 eV Emax= 600 MeV
0282 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0283
0284 msc: for e+ SubType= 10
0285 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0286 GoudsmitSaunderson : Emin= 0 eV Emax= 600 MeV Nbins=140 100 eV - 600 MeV
0287 StepLim=SafetyPlus Rfact=0.08 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=3 Llim=1 mm
0288
0289 eIoni: for e+ XStype:3 SubType=2
0290 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0291 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0292 StepFunction=(0.2, 0.01 mm), integ: 3, fluct: 1, linLossLim= 0.01
0293 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0294 MollerBhabha : Emin= 0 eV Emax= 600 MeV deltaVI
0295
0296 eBrem: for e+ XStype:4 SubType=3
0297 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0298 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0299 LPM flag: 1 for E > 0.6 GeV, VertexHighEnergyTh(GeV)= 100000
0300 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0301 eBremSB : Emin= 0 eV Emax= 600 MeV AngularGen2BS
0302
0303 annihil: for e+ XStype:2 SubType=5 AtRestModel:Allison BuildTable=0
0304 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0305 eplus2gg : Emin= 0 eV Emax= 600 MeV
0306
0307 msc: for proton SubType= 10
0308 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0309 UrbanMsc : Emin= 1 MeV Emax= 600 MeV Nbins=60 1 MeV - 600 MeV
0310 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0311
0312 hIoni: for proton XStype:3 SubType=2
0313 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0314 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0315 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0316 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0317 BetheBloch : Emin= 300 MeV Emax= 600 MeV deltaVI
0318
0319 proton_G4DNAElastic: for proton SubType=51 BuildTable=0
0320 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0321 DNAIonElasticModel : Emin= 0 eV Emax= 1 MeV
0322 DummyModel : Emin= 1 MeV Emax= 600 MeV
0323 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0324
0325 proton_G4DNAExcitation: for proton SubType=52 BuildTable=0
0326 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0327 DNAMillerGreenExcitationModel : Emin= 0 eV Emax= 500 keV
0328 DNABornExcitationModel : Emin= 500 keV Emax= 100 MeV
0329 DNARPWBAExcitationModel : Emin= 100 MeV Emax= 300 MeV
0330 DummyModel : Emin= 300 MeV Emax= 600 MeV
0331 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0332
0333 proton_G4DNAIonisation: for proton SubType=53 BuildTable=0
0334 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0335 DNARuddIonisationExtendedModel : Emin= 0 eV Emax= 500 keV deltaRudd Fluo
0336 DNABornIonisationModel : Emin= 500 keV Emax= 100 MeV deltaBorn Fluo
0337 DNARPWBAIonisationModel : Emin= 100 MeV Emax= 300 MeV deltaBorn Fluo
0338 DummyModel : Emin= 300 MeV Emax= 600 MeV
0339 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0340
0341 proton_G4DNAChargeDecrease: for proton SubType=56 BuildTable=0
0342 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0343 DNADingfelderChargeDecreaseModel : Emin= 0 eV Emax= 100 MeV
0344 DummyModel : Emin= 100 MeV Emax= 600 MeV
0345 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0346
0347 msc: for GenericIon SubType= 10
0348 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0349 UrbanMsc : Emin= 1 MeV Emax= 600 MeV
0350 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0351
0352 ionIoni: for GenericIon XStype:3 SubType=2
0353 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0354 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0355 StepFunction=(0.1, 0.001 mm), integ: 3, fluct: 1, linLossLim= 0.02
0356 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0357 BetheBloch : Emin= 300 MeV Emax= 600 MeV deltaVI
0358
0359 GenericIon_G4DNAIonisation: for GenericIon SubType=53 BuildTable=0
0360 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0361 DNAIonIonisationModel : Emin= 0 eV Emax= 300 MeV
0362 DummyModel : Emin= 300 MeV Emax= 600 MeV
0363 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0364
0365 nuclearStopping: for GenericIon SubType=8 BuildTable=0
0366 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0367 ICRU49NucStopping : Emin= 0 eV Emax= 1 MeV
0368 ======================================================================
0369 ====== Radioactive Decay Physics Parameters =======
0370 ======================================================================
0371 min MeanLife (from G4NuclideTable) 1 ns
0372 Max life time (from G4DeexPrecoParameters) 1000 ps
0373 Internal e- conversion flag 1
0374 Stored internal conversion coefficients 1
0375 Enabled atomic relaxation mode 1
0376 Enable correlated gamma emission 0
0377 Max 2J for sampling of angular correlations 10
0378 Atomic de-excitation enabled 1
0379 Auger electron emission enabled 1
0380 Check EM cuts disabled for atomic de-excitation 1
0381 Use Bearden atomic level energies 0
0382 Use ANSTO fluorescence model 0
0383 Threshold for very long decay time at rest 1 y
0384 ======================================================================
0385
0386 ====================================================================
0387 HADRONIC PROCESSES SUMMARY (verbose level 1)
0388 -------------------------------------------------------------------------
0389 Hadronic Processes for GenericIon
0390 Process: RadioactiveDecay
0391
0392 msc: for alpha SubType= 10
0393 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0394 UrbanMsc : Emin= 1 MeV Emax= 600 MeV
0395 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0396
0397 ionIoni: for alpha XStype:3 SubType=2
0398 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0399 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0400 StepFunction=(0.1, 0.02 mm), integ: 3, fluct: 1, linLossLim= 0.02
0401 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0402 BetheBloch : Emin= 300 MeV Emax= 600 MeV deltaVI
0403
0404 alpha_G4DNAElastic: for alpha SubType=51 BuildTable=0
0405 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0406 DNAIonElasticModel : Emin= 0 eV Emax= 1 MeV
0407 DummyModel : Emin= 1 MeV Emax= 600 MeV
0408 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0409
0410 alpha_G4DNAExcitation: for alpha SubType=52 BuildTable=0
0411 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0412 DNAMillerGreenExcitationModel : Emin= 0 eV Emax= 300 MeV
0413 DummyModel : Emin= 300 MeV Emax= 600 MeV
0414 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0415
0416 alpha_G4DNAIonisation: for alpha SubType=53 BuildTable=0
0417 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0418 DNARuddIonisationExtendedModel : Emin= 0 eV Emax= 300 MeV deltaRudd Fluo
0419 DummyModel : Emin= 300 MeV Emax= 600 MeV
0420 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0421
0422 alpha_G4DNAChargeDecrease: for alpha SubType=56 BuildTable=0
0423 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0424 DNADingfelderChargeDecreaseModel : Emin= 0 eV Emax= 300 MeV
0425 DummyModel : Emin= 300 MeV Emax= 600 MeV
0426 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0427
0428 msc: for alpha+ SubType= 10
0429 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0430 UrbanMsc : Emin= 1 MeV Emax= 600 MeV
0431 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0432
0433 hIoni: for alpha+ XStype:3 SubType=2
0434 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0435 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0436 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0437 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0438 BetheBloch : Emin= 300 MeV Emax= 600 MeV deltaVI
0439
0440 alpha+_G4DNAElastic: for alpha+ SubType=51 BuildTable=0
0441 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0442 DNAIonElasticModel : Emin= 0 eV Emax= 1 MeV
0443 DummyModel : Emin= 1 MeV Emax= 600 MeV
0444 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0445
0446 alpha+_G4DNAExcitation: for alpha+ SubType=52 BuildTable=0
0447 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0448 DNAMillerGreenExcitationModel : Emin= 0 eV Emax= 300 MeV
0449 DummyModel : Emin= 300 MeV Emax= 600 MeV
0450 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0451
0452 alpha+_G4DNAIonisation: for alpha+ SubType=53 BuildTable=0
0453 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0454 DNARuddIonisationExtendedModel : Emin= 0 eV Emax= 300 MeV deltaRudd Fluo
0455 DummyModel : Emin= 300 MeV Emax= 600 MeV
0456 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0457
0458 alpha+_G4DNAChargeIncrease: for alpha+ SubType=57 BuildTable=0
0459 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0460 DNADingfelderChargeIncreaseModel : Emin= 0 eV Emax= 300 MeV
0461 DummyModel : Emin= 300 MeV Emax= 600 MeV
0462 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0463
0464 alpha+_G4DNAChargeDecrease: for alpha+ SubType=56 BuildTable=0
0465 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0466 DNADingfelderChargeDecreaseModel : Emin= 0 eV Emax= 300 MeV
0467 DummyModel : Emin= 300 MeV Emax= 600 MeV
0468 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0469
0470 msc: for anti_proton SubType= 10
0471 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0472 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0473 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0474
0475 hIoni: for anti_proton XStype:3 SubType=2
0476 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0477 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0478 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0479 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0480 ICRU73QO : Emin= 0 eV Emax= 2 MeV deltaVI
0481 BetheBloch : Emin= 2 MeV Emax= 600 MeV deltaVI
0482
0483 helium_G4DNAElastic: for helium SubType=51 BuildTable=0
0484 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0485 DNAIonElasticModel : Emin= 0 eV Emax= 1 MeV
0486 DummyModel : Emin= 1 MeV Emax= 600 MeV
0487 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0488
0489 helium_G4DNAExcitation: for helium SubType=52 BuildTable=0
0490 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0491 DNAMillerGreenExcitationModel : Emin= 0 eV Emax= 300 MeV
0492 DummyModel : Emin= 300 MeV Emax= 600 MeV
0493 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0494
0495 helium_G4DNAIonisation: for helium SubType=53 BuildTable=0
0496 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0497 DNARuddIonisationExtendedModel : Emin= 0 eV Emax= 300 MeV deltaRudd Fluo
0498 DummyModel : Emin= 300 MeV Emax= 600 MeV
0499 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0500
0501 helium_G4DNAChargeIncrease: for helium SubType=57 BuildTable=0
0502 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0503 DNADingfelderChargeIncreaseModel : Emin= 0 eV Emax= 300 MeV
0504 DummyModel : Emin= 300 MeV Emax= 600 MeV
0505 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0506
0507 hydrogen_G4DNAElastic: for hydrogen SubType=51 BuildTable=0
0508 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0509 DNAIonElasticModel : Emin= 0 eV Emax= 1 MeV
0510 DummyModel : Emin= 1 MeV Emax= 600 MeV
0511 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0512
0513 hydrogen_G4DNAExcitation: for hydrogen SubType=52 BuildTable=0
0514 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0515 DNAMillerGreenExcitationModel : Emin= 0 eV Emax= 500 keV
0516 DummyModel : Emin= 500 keV Emax= 600 MeV
0517 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0518
0519 hydrogen_G4DNAIonisation: for hydrogen SubType=53 BuildTable=0
0520 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0521 DNARuddIonisationExtendedModel : Emin= 0 eV Emax= 300 MeV deltaRudd Fluo
0522 DummyModel : Emin= 300 MeV Emax= 600 MeV
0523 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0524
0525 hydrogen_G4DNAChargeIncrease: for hydrogen SubType=57 BuildTable=0
0526 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0527 DNADingfelderChargeIncreaseModel : Emin= 0 eV Emax= 100 MeV
0528 DummyModel : Emin= 100 MeV Emax= 600 MeV
0529 StepLim=UseSafety Rfact=0.04 Gfact=2.5 Sfact=0.6 DispFlag:1 Skin=1 Llim=1 mm
0530
0531 msc: for kaon+ SubType= 10
0532 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0533 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0534 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0535
0536 hIoni: for kaon+ XStype:3 SubType=2
0537 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0538 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0539 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0540 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0541 Bragg : Emin= 0 eV Emax=1.05231 MeV deltaVI
0542 BetheBloch : Emin=1.05231 MeV Emax= 600 MeV deltaVI
0543
0544 msc: for kaon- SubType= 10
0545 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0546 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0547 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0548
0549 hIoni: for kaon- XStype:3 SubType=2
0550 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0551 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0552 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0553 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0554 ICRU73QO : Emin= 0 eV Emax=1.05231 MeV deltaVI
0555 BetheBloch : Emin=1.05231 MeV Emax= 600 MeV deltaVI
0556
0557 msc: for mu+ SubType= 10
0558 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0559 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0560 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0561
0562 hIoni: for mu+ XStype:3 SubType=2
0563 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0564 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0565 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0566 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0567 Bragg : Emin= 0 eV Emax=225.219 keV deltaVI
0568 BetheBloch : Emin=225.219 keV Emax= 600 MeV deltaVI
0569
0570 msc: for mu- SubType= 10
0571 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0572 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0573 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0574
0575 hIoni: for mu- XStype:3 SubType=2
0576 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0577 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0578 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0579 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0580 ICRU73QO : Emin= 0 eV Emax=225.219 keV deltaVI
0581 BetheBloch : Emin=225.219 keV Emax= 600 MeV deltaVI
0582
0583 msc: for pi+ SubType= 10
0584 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0585 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0586 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0587
0588 hIoni: for pi+ XStype:3 SubType=2
0589 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0590 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0591 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0592 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0593 Bragg : Emin= 0 eV Emax=297.505 keV deltaVI
0594 BetheBloch : Emin=297.505 keV Emax= 600 MeV deltaVI
0595
0596 msc: for pi- SubType= 10
0597 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0598 WentzelVIUni : Emin= 0 eV Emax= 600 MeV
0599 StepLim=Minimal Rfact=0.2 Gfact=2.5 Sfact=0.6 DispFlag:0 Skin=3 Llim=1 mm
0600
0601 hIoni: for pi- XStype:3 SubType=2
0602 dE/dx and range tables from 10 eV to 600 MeV in 160 bins
0603 Lambda tables from threshold to 600 MeV, 20 bins/decade, spline: 1
0604 StepFunction=(0.1, 0.05 mm), integ: 3, fluct: 1, linLossLim= 0.01
0605 ===== EM models for the G4Region DefaultRegionForTheWorld ======
0606 ICRU73QO : Emin= 0 eV Emax=297.505 keV deltaVI
0607 BetheBloch : Emin=297.505 keV Emax= 600 MeV deltaVI
0608
0609 Region <DefaultRegionForTheWorld> -- -- appears in <world> world volume
0610 This region is in the mass world.
0611 Root logical volume(s) : world
0612 Pointers : G4VUserRegionInformation[0], G4UserLimits[0], G4FastSimulationManager[0], G4UserSteppingAction[0]
0613 Materials : G4_Galactic G4_WATER
0614 Production cuts : gamma 1 um e- 1 um e+ 1 um proton 1 um
0615
0616 Region <DefaultRegionForParallelWorld> -- -- is not associated to any world.
0617 Root logical volume(s) :
0618 Pointers : G4VUserRegionInformation[0], G4UserLimits[0], G4FastSimulationManager[0], G4UserSteppingAction[0]
0619 Materials :
0620 Production cuts : gamma 1 um e- 1 um e+ 1 um proton 1 um
0621
0622 ========= Table of registered couples ============================
0623
0624 Index : 0 used in the geometry : Yes
0625 Material : G4_Galactic
0626 Range cuts : gamma 1 um e- 1 um e+ 1 um proton 1 um
0627 Energy thresholds : gamma 100 eV e- 100 eV e+ 100 eV proton 100 eV
0628 Region(s) which use this couple :
0629 DefaultRegionForTheWorld
0630
0631 Index : 1 used in the geometry : Yes
0632 Material : G4_WATER
0633 Range cuts : gamma 1 um e- 1 um e+ 1 um proton 1 um
0634 Energy thresholds : gamma 100 eV e- 242.143 eV e+ 239.346 eV proton 100 eV
0635 Region(s) which use this couple :
0636 DefaultRegionForTheWorld
0637
0638 ==================================================================
0639
0640 Start closing geometry.
0641 --------------------------------------------------------------------------------
0642 G4GeometryManager::ReportVoxelStats -- Voxel Statistics
0643
0644 Total memory consumed for geometry optimisation: 84655 kByte
0645 Total CPU time elapsed for geometry optimisation: 26.34 seconds
0646
0647 Voxelisation: top CPU users:
0648 Percent Total CPU System CPU Memory Volume
0649 ------- ---------- ---------- -------- ----------
0650 51.21 13.49 0.07 42138k DNAPhysLV
0651 48.63 12.81 0.07 42138k CellLogical
0652 0.04 0.01 0.00 380k prism
0653
0654 Voxelisation: top memory users:
0655 Percent Memory Heads Nodes Pointers Total CPU Volume
0656 ------- -------- ------ ------ -------- ---------- ----------
0657 49.78 42137k 311671 314256 703064 13.49 DNAPhysLV
0658 49.78 42137k 311671 314256 703064 12.81 CellLogical
0659 0.45 379k 1273 3780 14482 0.01 prism
0660 --------------------------------------------------------------------------------
0661
0662 ### Run 0 starts.
0663 AnalysisManager::Initialize() GetRunID : 0
0664 ... set ntuple merging row mode : row-wise - done
0665 ... create file : molecular-dna.root - done
0666 ... open analysis file : molecular-dna.root - done
0667 ... open analysis file : molecular-dna.root - done
0668 --> Event 0 starts.
0669
0670 DNAIndependentReactionTimeModel will be used ==========================
0671
0672 =======================================================================
0673
0674 Run terminated.
0675 Run Summary
0676 Number of events processed : 10
0677 User=0.660000s Real=0.658905s Sys=0.010000s
0678 ... write file : molecular-dna.root - done
0679 ... close file : molecular-dna.root - done
0680 G4 kernel has come to Quit state.
0681 Deleting G4Run (id:0)
0682 UserDetectorConstruction deleted 0x226a3f0
0683 UserPhysicsList deleted 0x22adf20
0684 UserActionInitialization deleted 0x22e5fd0
0685 UserWorkerInitialization deleted 0
0686 UserWorkerThreadInitialization deleted 0
0687 UserRunAction deleted.
0688 UserPrimaryGenerator deleted.
0689 RunManager is deleting RunManagerKernel.
0690 G4SDManager deleted.
0691 EventManager deleted.
0692 Units table cleared.
0693 TransportationManager deleted.
0694 Total navigation history collections cleaned: 1341
0695 G4RNGHelper object is deleted.
0696 ================== Deleting memory pools ===================
0697 Pool ID '20G4NavigationLevelRep', size : 1.06 MB
0698 Pool ID '19G4ElectronOccupancy', size : 0.000961 MB
0699 Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
0700 Pool ID '7G4Event', size : 0.000961 MB
0701 Pool ID '15G4PrimaryVertex', size : 0.000961 MB
0702 Pool ID '17G4PrimaryParticle', size : 0.000961 MB
0703 Pool ID '13ChromosomeHit', size : 0.000961 MB
0704 Pool ID '17G4DynamicParticle', size : 0.127 MB
0705 Pool ID '7G4Track', size : 0.254 MB
0706 Pool ID '18G4TouchableHistory', size : 0.0663 MB
0707 Pool ID '15G4CountedObjectIvE', size : 0.0856 MB
0708 Pool ID '10G4Molecule', size : 0.0769 MB
0709 Pool ID '8G4OctreeI19G4FastList_iteratorI7G4TrackE9ExtractorI10G4FastListIS1_EEN5CLHEP10Hep3VectorEE', size : 0.000961 MB
0710 Pool ID '6DNAHit', size : 0.00673 MB
0711 Number of memory pools allocated: 14 of which, static: 0
0712 Dynamic pools deleted: 14 / Total memory freed: 1.7 MB
0713 ============================================================
0714 G4Allocator objects are deleted.
0715 UImanager deleted.
0716 StateManager deleted.
0717 RunManagerKernel is deleted. Good bye :)
0718 RunManager is deleted.
