moleculardna/include/RodChromosome.hh

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0025 //
0026 //
0027 /// file: RodChromosome.hh
0028 /// brief: declaration file for a rod-shaped chromosome model.
0029
0030 #ifndef MOLECULAR_ROD_CHROMOSOME_HH
0031 #define MOLECULAR_ROD_CHROMOSOME_HH
0032
0033 #include "VirtualChromosome.hh"
0034
0035 #include "G4RotationMatrix.hh"
0036 #include "G4ThreeVector.hh"
0037 #include "globals.hh"
0038
0039 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0040
0041 class RodChromosome : public VirtualChromosome
0042 {
0043   public:
0044     explicit RodChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&);
0045
0046     explicit RodChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&,
0047                            const G4RotationMatrix&);
0048
0049     ~RodChromosome() override;
0050
0051     bool PointInChromosome(G4ThreeVector const& position) override;
0052
0053     G4ThreeVector RandomPointInChromosome() override;
0054
0055     G4String GetShape() override { return fShape; };
0056     static const G4String fShape;
0057
0058     void Print() override
0059     {
0060       G4cout << "type: " << fShape << G4endl;
0061       G4cout << "radius: " << fRadius << G4endl;
0062       G4cout << "height: " << fHeight << G4endl;
0063       G4cout << "center: " << fCenter << G4endl;
0064       G4cout << "rotation: " << fRotation.getPhi() << " " << fRotation.getTheta() << " "
0065              << fRotation.getPhi() << G4endl;
0066     }
0067
0068     void SetRotation(const G4RotationMatrix& rot)
0069     {
0070       fRotation = rot;
0071       fInverseRotation = fRotation.inverse();
0072     };
0073
0074     G4RotationMatrix GetRotation() const { return fRotation; };
0075
0076     G4ThreeVector GetPosition() const { return fCenter; };
0077
0078     G4double GetRadius() const { return fRadius; };
0079
0080     G4double GetHeight() const { return fHeight; };
0081
0082   protected:
0083   private:
0084     G4ThreeVector fCenter;
0085     G4double fRadius;
0086     G4double fHeight;
0087     G4RotationMatrix fRotation, fInverseRotation;
0088 };
0089
0090 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
0091
0092 #endif  // MOLECULAR_ROD_CHROMOSOME_HH