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 /// \file ParametersParser.hh
 /// \brief Definition of the ParametersParser class
 
 #ifndef ParametersParser_h
 #define ParametersParser_h 1
 #include <string>
 class ParametersParser
 {
 public:
     static ParametersParser* Instance();
     ~ParametersParser() = default;
     void LoadParameters(const std::string &fileName);
     std::string GetTLKLambda1() {return TLKLambda1;}
     std::string GetTLKLambda2() {return TLKLambda2;}
     std::string GetTLKBeta1() {return TLKBeta1;}
     std::string GetTLKBeta2() {return TLKBeta2;}
     std::string GetTLKEta() {return TLKEta;}
     std::string GetTLKdoseMax() {return TLKdoseMax;}
     std::string GetTLKdeltaDose() {return TLKdeltaDose;}
     std::string GetEMIVLoopLength() {return LEMIVLoopLength;}
     std::string GetEMIVNi() {return LEMIVNi;}
     std::string GetEMIVNc() {return LEMIVNc;}
     std::string GetEMIVNDSB() {return LEMIVNDSB;}
     std::string GetEMIVFunrej() {return LEMIVFunrej;}
     std::string GetEMIVTFast() {return LEMIVTfast;}
     std::string GetEMIVTSlow() {return LEMIVTslow;}
     std::string GetLEMtimeMax() {return LEMIVtimeMax;}
     std::string GetLEMdeltaTime() {return LEMIVdeltaTime;}
     std::string GetBELOVNirrep() {return BELOVNirrep;}
     std::string GetBELOVDz() {return BELOVDz;}
     std::string GetThresholdE() {return fThresholdE;}
     std::string GetProbabilityForIndirectSB() {return fProbabilityForIndirectSB;}
     std::string GetParticleName() {return fParticleName;}
     float GetParticleEnergy() {return fParticleEnergy;}
     std::string GetEnergyUnit() {return fEnergyUnit;}
     std::string GetEndTimeForChemReactions() {return fEndTimeForChemReactions;}
     int GetNumberOfParticles() {return fNumberOfParticles;}
     int GetBpForDSB() {return BpForDSB;}
     bool UseTLK();
     bool UseLEMIV();
     bool UseBelov();
     bool WannaLoadDamagesFromSDD() {return fLoadDamagesFromSDD;}
     std::string GetOutputName() {return fOutputName;};
     std::string GetSDDFileName() {return fSDDfileName;};
     std::string GetCellNucleusName() {return fCellNucleusName;};
     int GetUnitTypeOfNormalization() {return fUnitOfNormalization;}
     bool WannaSkipScanningIndirectDamage() {return fSkipScanningIndirectDamage;}
     std::string GetChemOutFolderName() {return fChemOutFolderName;}
 private:
     explicit ParametersParser();
     static ParametersParser* fInstance;
     std::string fOutputName{"Output.dat"};
     std::string fChemOutFolderName{""};
     std::string fSDDfileName{""};
     std::string fCellNucleusName{"Undefined"};
     std::string fThresholdE{""};
     std::string fProbabilityForIndirectSB{""};
     // num of bp to consider a DSB for the MakeCluster function default value is 10
     int BpForDSB{0}; 
     // TLK parameters
     std::string useTLK{"true"};
     // simple DSB repair probability (h-1)  
     std::string TLKLambda1{""};
     // complex DSB repair probability (h-1) 
     std::string TLKLambda2{""};
     // simple DSB misrepair probability (h-1)
     std::string TLKBeta1{""};
     // complex DSB misrepair probability (h-1)
     std::string TLKBeta2{""};
     // binary misrepair probability (h-1)
     std::string TLKEta{""};
     std::string TLKdoseMax{""}, TLKdeltaDose{""};
 
     // LEMIV parameters
     std::string useLEMIV{"true"};
     std::string LEMIVLoopLength{""}; // length of the loop in Mbp, 
     //isolated DSB yield in Gy-1
     std::string LEMIVNi{""};
     //clustered DSB yield in Gy-1
     std::string LEMIVNc{""};
     // DSB yield in Gy-1
     std::string LEMIVNDSB{""};
     std::string LEMIVFunrej{""};
     // constant time in h-1
     std::string LEMIVTfast{""};
     std::string LEMIVTslow{""};
     std::string LEMIVtimeMax{""}, LEMIVdeltaTime{""};
 
     // BELOV parameters
     std::string useBELOV{"false"};
     std::string BELOVNirrep{""};
     std::string BELOVDz{""};
 
     // source info
     std::string fParticleName{""};
     float fParticleEnergy{0};
     std::string fEnergyUnit{""};
     int fNumberOfParticles{0};
 
     std::string fEndTimeForChemReactions{""};
 
     bool fLoadDamagesFromSDD{false};
     int fUnitOfNormalization{1}; // unit type for normization: 2 : [Gy-1]; 1: [Gy-1 * Gbp-1]
     bool fSkipScanningIndirectDamage{false};
 };
 
 #endif

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